View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_11 (Length: 422)
Name: NF16257_low_11
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_11 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 5231492 - 5231081
Alignment:
| Q |
10 |
gcagcacagacactggtatttacgtagtacacatgcgcctaagattacattaacnnnnnnnnnnttaaactaagcttcaataaagtaacaattttggacc |
109 |
Q |
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|||||||| | |||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
5231492 |
gcagcacaaatactggtatttacgtagtacacatgtgcctaagattacattaacaaaaaaaaa-tcaaactaagcttcaataaagtaacaattttggacc |
5231394 |
T |
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| Q |
110 |
ataatcttatcatgaactaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231393 |
ataatcttatcatgaactaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattg |
5231294 |
T |
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| Q |
210 |
ttttattgctttatgtaaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5231293 |
ttttattgctttatgtaaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggtta |
5231194 |
T |
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| Q |
310 |
taactcaaaccatgaaacaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgt |
409 |
Q |
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| T |
5231193 |
taactcaaaccatgaaacaatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgt |
5231094 |
T |
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| Q |
410 |
tcgaccaaaatta |
422 |
Q |
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| T |
5231093 |
tctaccaaaatta |
5231081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
347 |
accatattcatcaataggagcatcataatcatagcttgt |
385 |
Q |
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| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 402
Target Start/End: Complemental strand, 5452968 - 5452910
Alignment:
| Q |
344 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccac |
402 |
Q |
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| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccac |
5452910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 17126716 - 17126637
Alignment:
| Q |
343 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaatta |
422 |
Q |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaatta |
17126637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 42988695 - 42988770
Alignment:
| Q |
346 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaatt |
421 |
Q |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatt |
42988770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 17126925 - 17126793
Alignment:
| Q |
137 |
actttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaa |
236 |
Q |
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| T |
17126925 |
actttacctcaaggttttt---tccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttag |
17126829 |
T |
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| Q |
237 |
atggctccattttggttcatttggaagtcctaatat |
272 |
Q |
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| T |
17126828 |
atgcccccattttggttcacttataagtcctgatat |
17126793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 52647440 - 52647401
Alignment:
| Q |
346 |
taccatattcatcaataggagcatcataatcatagcttgt |
385 |
Q |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgt |
52647401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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