View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_12 (Length: 402)
Name: NF16257_low_12
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 44631304 - 44630929
Alignment:
| Q |
9 |
acatcatcaactcaacaagatacaggatacaaagtttgagtatgagaattatatcatgcaagaaattcaaacgatttcgaccaaacatttatatacaagc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631304 |
acatcatcaactcaacaagatacaggatacaaagtttgagtatgagaattatatcatgcaagaaattcaaacgatttcgaccaaacatttatatacaagc |
44631205 |
T |
|
| Q |
109 |
cacatacaggcagaagtcttcacggaaacctggtaacctccaattcttggacacactctagttgtaaaataaacactaaaagtatatcgaacacgtcacg |
208 |
Q |
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| T |
44631204 |
cacatataggcagaagtcttcacggaaacctggtaacctccaattcttggacacactctagttgtaaaataaacactaaaagtatatcgaacacgtcacg |
44631105 |
T |
|
| Q |
209 |
acatagtcctcaacaacagaaagatcgatatttcatgccaatacaaatcctagaaacctctactataggatttcttgtttaactggtacattcatgcata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44631104 |
acatagtcctcaacaacagaaagatcgatatttcatgccaatacaaatcctagaaacctctactataggatatcttgtttaactggtacattcatgcata |
44631005 |
T |
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| Q |
309 |
ataattaagaagtgaagcagattacgattcaatgaagggaatgtgtgatgcaagtatgcaatcatcattagctatg |
384 |
Q |
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| T |
44631004 |
ataattaagaagtgaagcagattacgattcaatgaagggaatgtgtgatgcaagtatgcaaccatcattagctatg |
44630929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 300
Target Start/End: Original strand, 44637595 - 44637832
Alignment:
| Q |
64 |
atgcaagaaattcaaacgatttcgaccaaacatttatatacaagccacatacaggcagaagtcttcacggaaacctggtaacctccaattcttggacaca |
163 |
Q |
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| T |
44637595 |
atgcaagaaattcaaatgatttcgaccaaacactggtatacgagctacgtatagacagaagtcttcatggaatccttgtaacctccaattcttggacaca |
44637694 |
T |
|
| Q |
164 |
ctctagttgtaaaataaacactaaaagtatatcgaa-cacgtcacgacatagtcctcaacaacagaaagatcgatattt-catgccaatacaaatcctag |
261 |
Q |
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|| | | ||| |||||||| ||||| |||||||| | | ||| |||||||||||| ||| || | | | || ||| ||||||| |||||||||||| |
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| T |
44637695 |
ttccaatggtataataaacaataaaaacatatcgaaccccatcatgacatagtcctcgacaggag-aggtgccatgtttacatgccagtacaaatcctag |
44637793 |
T |
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| Q |
262 |
aaacctctactataggatttcttgtttaactggtacatt |
300 |
Q |
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| T |
44637794 |
aaacctctactatagtatttattgttaaacgggtacatt |
44637832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 44681646 - 44681524
Alignment:
| Q |
172 |
gtaaaataaacactaaaagtatatcgaa-cacgtcacgacatagtcctcaacaacagaaagatcga-tatttcatgccaatacaaatcctagaaacctct |
269 |
Q |
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|||||| ||||| || || ||||||||| || ||||| ||||||||||||||| ||| | ||| | | ||||||||||||| ||||| |||||||||| |
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| T |
44681646 |
gtaaaacaaacagtacaaatatatcgaaacatatcacggcatagtcctcaacaagagagaaatcaaatttttcatgccaataaaaatctcagaaacctct |
44681547 |
T |
|
| Q |
270 |
actataggatttcttgtttaact |
292 |
Q |
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|||||| |||||||||||||| |
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| T |
44681546 |
gctatagattttcttgtttaact |
44681524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 44652629 - 44652524
Alignment:
| Q |
172 |
gtaaaataaacactaaaagtatatcgaa-cacgtcacgacatagtcctcaacaacagaaagatcgatatttcatgccaatacaaatcctagaaacctcta |
270 |
Q |
| |
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|||||| ||||| || || ||||||||| || ||||||||||||||||||||| ||| | ||| | ||||||||||||| |||| ||||||||||| |
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| T |
44652629 |
gtaaaacaaacagtacaaatatatcgaaacatatcacgacatagtcctcaacaagagagaaatcaaattttcatgccaataaaaatgttagaaacctctg |
44652530 |
T |
|
| Q |
271 |
ctatag |
276 |
Q |
| |
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|||||| |
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|
| T |
44652529 |
ctatag |
44652524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 44691453 - 44691419
Alignment:
| Q |
77 |
aaacgatttcgaccaaacatttatatacaagccac |
111 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
44691453 |
aaacgatttctaccaaacatttatatacaagccac |
44691419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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