View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_14 (Length: 348)
Name: NF16257_low_14
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 45 - 333
Target Start/End: Complemental strand, 37554962 - 37554673
Alignment:
| Q |
45 |
tagaaagataaatatttctttttggtaggatataataaatagttaagcaataatacaaggaataatagtttactttaaagannnnnnnnn-atgaaaact |
143 |
Q |
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| T |
37554962 |
tagaaagataaatatttctttttggtaggatataataaatagttaagcaataatacaaggaataatagtttactttaaagattttttttttatgaaaatt |
37554863 |
T |
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| Q |
144 |
cggtatccgatgtaaagaccgactaaagannnnnnnaaaacgcaattatataagacggctttattttcttaatttacgccttaatcaccttagagaatcc |
243 |
Q |
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| T |
37554862 |
cggtatccgatctaaagaccgactaaagatttttttaaaacgcaattatatatgacggctttattttcttaatttacgccttaatcaccttagagaatcc |
37554763 |
T |
|
| Q |
244 |
aaacctgtcaatccgtgtaaaccatattccgcatattttaattttcatgttctttcttaccttttgtttttggacacatgacatgttctt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37554762 |
aaacctgtcaatccgtgtaaaccatattccgcatattttaattttcatgttctttcttaccttttgtttttggacacatgacatgttctt |
37554673 |
T |
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