View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_16 (Length: 333)
Name: NF16257_low_16
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 43860444 - 43860745
Alignment:
| Q |
19 |
tagaatatataactttaattaattgagaatattttcccccacccattgtttttaaaaataccggaactaaatatgagtaattggcctcacttataaagtc |
118 |
Q |
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| T |
43860444 |
tagaatatataactttaattaattgagaatattttcccccacccattgtttt-aaaaataccggaactaaatatgagcaattggcctcacttataaagcc |
43860542 |
T |
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| Q |
119 |
aaatgtgagttagagtttttatatccgatgcaagctcaagcaaataaacaaaccaaagttagagtgtgattgagtgtacaaaccaatgtaagattctttc |
218 |
Q |
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| T |
43860543 |
aaatgtgagttagagtttttatatccgatgcaagctcaagcaaataaacaaaccaaagttagagtgtgattgagtgtacaaaccaatgtaagattctttc |
43860642 |
T |
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| Q |
219 |
tcaactcacctcttttagttttcatgcttgtttattttttgcttctaaatgaaacaaatttcaaataaaaaatgttttattttatggattgatttgtaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43860643 |
tcaactcacctcttttagttttcatgcttgtttattttttgcttctaaatgaaacaaatttcaaataaaaaatgttttattttatggattgatttgtaac |
43860742 |
T |
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| Q |
319 |
ctt |
321 |
Q |
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||| |
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| T |
43860743 |
ctt |
43860745 |
T |
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