View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16257_low_2 (Length: 934)
Name: NF16257_low_2
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 379 - 910
Target Start/End: Original strand, 52511836 - 52512387
Alignment:
| Q |
379 |
catgagtagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagaccttta |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52511836 |
catgagtagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagaccttta |
52511935 |
T |
|
| Q |
479 |
ttgtttggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnnngaaat |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
52511936 |
ttgtttggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaag-aaaaaaagaaat |
52512034 |
T |
|
| Q |
579 |
gagcaaagtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcct |
678 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512035 |
gagcaaattagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcct |
52512134 |
T |
|
| Q |
679 |
gtaccaccacacatatcacct----------aaatgaaaagtagtattataataaggaagaagaatattattat-----------taaaaaagaatgagg |
757 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||| | |
|
|
| T |
52512135 |
gtaccaccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaag |
52512234 |
T |
|
| Q |
758 |
agaaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcatt |
857 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512235 |
agaaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcatt |
52512334 |
T |
|
| Q |
858 |
aattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
910 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512335 |
aattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
52512387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 52511438 - 52511795
Alignment:
| Q |
19 |
acatagcaatacttgctagaagtgtctgttgaatgtttacactata----cctgacattttggaagtcattttggtaatcgtgaatatgggcaatcttag |
114 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52511438 |
acatagcaatacttggtagaagtgtttgttgaatgtttacactatatatacctgacattttggaagtcattttggtaatcgtgaatattggcaatcttag |
52511537 |
T |
|
| Q |
115 |
tattgaaaaatggtatttctttcatacaaaatattgaaattcaataggtgctaactagtaaccaagcaaaatttagggttctggaatacctccagaccaa |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52511538 |
tattgaaaaatggtttttctttcatacaaaatattgaaattcaataggtgctaactagtaaccgagcaaaatttagggttctggaatgcctccagaccaa |
52511637 |
T |
|
| Q |
215 |
atatattctaagctaggagccgattaccattgcagtcactggtggaccagaaataagcattagcaagcctcaattcagttgtggtcacaaacaagaagga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52511638 |
atatattctaagctaggagccgattaccattgcagtcactggtggaccagaaataagcattagcaagcctcaattcagttgtggtcacaaacaagaagga |
52511737 |
T |
|
| Q |
315 |
ctgaaaaggatgtagtacagtgaatataa---cagcagcagcaacagaagattaacat |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52511738 |
ctgaaaaggatgtagtacagtgaatataacagcagcagcagcaacagaagattaacat |
52511795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University