View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_23 (Length: 283)
Name: NF16257_low_23
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 2854487 - 2854252
Alignment:
| Q |
7 |
aaaatctataaaac-gaatggaaattttttgaggcatgaagaaaatatcgtgcaagacattttaggaaagnnnnnnnnn--gtaggggtgagggactaga |
103 |
Q |
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| T |
2854487 |
aaaatctataaaactgaagggaaattttttgaggcatgaagaaaatatcgtgcaagacattttaggaaagaaaaaaaaaaagtaggggtgagggactaga |
2854388 |
T |
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| Q |
104 |
tggtgggtatggaaataaaaaacaacgaacaaagggtaataatttcacacgcaaagtaatctaatctagctaggaaatttccaaatttggcttcttttac |
203 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854387 |
tggtgggtatggaaataaaaaacaacaaacaaagggtaataatttcacacgcaaagtaatctaatctagctaggaaatttccaaatttggcttcttttac |
2854288 |
T |
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| Q |
204 |
aatcctggcatgaacaaatggtaataatattgttta |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2854287 |
aatcctggcatgaacaaatggtaataatattgttta |
2854252 |
T |
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