View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16257_low_27 (Length: 237)

Name: NF16257_low_27
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16257_low_27
NF16257_low_27
[»] chr8 (8 HSPs)
chr8 (19-237)||(15445790-15446008)
chr8 (28-237)||(15283540-15283749)
chr8 (28-237)||(15463909-15464118)
chr8 (30-237)||(15312908-15313115)
chr8 (30-237)||(15493277-15493484)
chr8 (21-237)||(15302043-15302259)
chr8 (21-237)||(15482412-15482628)
chr8 (83-227)||(18051544-18051688)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 15446008 - 15445790
Alignment:
Q  19 tatgatacaaagttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattattaatcttggtaaaaacaaattttctggaataatac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15446008 tatgatacaaagttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattgttaatcttggtaaaaacaaattttctggaataatac 15445909  T
Q  119 caaattggattggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatacgccaactatcctctctctttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  15445908 caaattggattggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatatgtcaactatcctctctctttgt 15445809  T
Q  219 tttggatctctcaaataat 237  Q
    |||||||||||||||||||    
T  15445808 tttggatctctcaaataat 15445790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 15283749 - 15283540
Alignment:
Q  28 aagttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattattaatcttggtaaaaacaaattttctggaataataccaaattgga 127  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||  ||||| ||||| || | || |||||| |||| ||||  |||||||||||||    
T  15283749 aagttgcatggggagataccagtgtcgttgaaaaattgtcaaaaactcatgattgttaattttaggaacaacaaactttcaggaaatataccaaattgga 15283650  T
Q  128 ttggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatacgccaactatcctctctctttgttttggatct 227  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  15283649 ttggaaaggatatgaaagttcttcaattgagagtaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctatttcttttggatct 15283550  T
Q  228 ctcaaataat 237  Q
    |||| |||||    
T  15283549 ctcatataat 15283540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 15464118 - 15463909
Alignment:
Q  28 aagttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattattaatcttggtaaaaacaaattttctggaataataccaaattgga 127  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||  ||||| ||||| || | || |||||| |||| ||||  |||||||||||||    
T  15464118 aagttgcatggggagataccagtgtcgttgaaaaattgtcaaaaactcatgattgttaattttaggaacaacaaactttcaggaaatataccaaattgga 15464019  T
Q  128 ttggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatacgccaactatcctctctctttgttttggatct 227  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  15464018 ttggaaaggatatgaaagttcttcaattgagagtaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctatttcttttggatct 15463919  T
Q  228 ctcaaataat 237  Q
    |||| |||||    
T  15463918 ctcatataat 15463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 15313115 - 15312908
Alignment:
Q  30 gttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattattaatcttggtaaaaacaaattttctggaataataccaaattggatt 129  Q
    |||||||||||| |||||  |||||||| ||| |||  ||||||| |||||| ||||| || | || |||||||||||||| |  |||||||||||||||    
T  15313115 gttgcatggggaaatacctgtgtcattggaaagttgtaaaaaactcgtgattgttaattttaggaacaacaaattttctggtaatataccaaattggatt 15313016  T
Q  130 ggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatacgccaactatcctctctctttgttttggatctct 229  Q
    ||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  15313015 ggacaagatatggaagttcttcaattgagatcaaatgaatttagtggtgatattccttcacaaatatgccaactatcctctctctttgttttggatctct 15312916  T
Q  230 caaataat 237  Q
    ||||||||    
T  15312915 caaataat 15312908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 15493484 - 15493277
Alignment:
Q  30 gttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattattaatcttggtaaaaacaaattttctggaataataccaaattggatt 129  Q
    |||||||||||| |||||  |||||||| ||| |||  ||||||| |||||| ||||| || | || |||||||||||||| |  |||||||||||||||    
T  15493484 gttgcatggggaaatacctgtgtcattggaaagttgtaaaaaactcgtgattgttaattttaggaacaacaaattttctggtaatataccaaattggatt 15493385  T
Q  130 ggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatacgccaactatcctctctctttgttttggatctct 229  Q
    ||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  15493384 ggacaagatatggaagttcttcaattgagatcaaatgaatttagtggtgatattccttcacaaatatgccaactatcctctctctttgttttggatctct 15493285  T
Q  230 caaataat 237  Q
    ||||||||    
T  15493284 caaataat 15493277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 15302259 - 15302043
Alignment:
Q  21 tgatacaaagttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattattaatcttggtaaaaacaaattttctggaataatacca 120  Q
    |||||| |||||||| |||||||||||  ||||| |||||||||||| ||||||  ||||  ||||||||   || |||   ||||| |||   ||||||    
T  15302259 tgatactaagttgcacggggagatacctgtgtcaatgaaaaattgccgaaaactcttgatgcttaatcttcagaacaactctttttcaggacctatacca 15302160  T
Q  121 aattggattggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatacgccaactatcctctctctttgttt 220  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  15302159 aattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctttttgttt 15302060  T
Q  221 tggatctctcaaataat 237  Q
    | |||||||||||||||    
T  15302059 tagatctctcaaataat 15302043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 15482628 - 15482412
Alignment:
Q  21 tgatacaaagttgcatggggagataccaatgtcattgaaaaattgccaaaaacttgtgattattaatcttggtaaaaacaaattttctggaataatacca 120  Q
    |||||| |||||||| |||||||||||  ||||| |||||||||||| ||||||  ||||  ||||||||   || |||   ||||| |||   ||||||    
T  15482628 tgatactaagttgcacggggagatacctgtgtcaatgaaaaattgccgaaaactcttgatgcttaatcttcagaacaactctttttcaggacctatacca 15482529  T
Q  121 aattggattggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatacgccaactatcctctctctttgttt 220  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  15482528 aattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctttttgttt 15482429  T
Q  221 tggatctctcaaataat 237  Q
    | |||||||||||||||    
T  15482428 tagatctctcaaataat 15482412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 18051688 - 18051544
Alignment:
Q  83 ttaatcttggtaaaaacaaattttctggaataataccaaattggattggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacat 182  Q
    ||||||||||| |||| ||||||||| |||  |||||||||||||||||| | ||  |||||| |||    |||||||||||||||||| ||||||  ||    
T  18051688 ttaatcttggtgaaaataaattttctagaagcataccaaattggattggacatgacgtgaaagctctcaggttgagatcaaatgaatttcgtggtgttat 18051589  T
Q  183 tcctttacaaatacgccaactatcctctctctttgttttggatct 227  Q
    |||| |||||||| ||||||| || |||||| | |||||||||||    
T  18051588 tcctctacaaatatgccaactttcttctctcatagttttggatct 18051544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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