View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_4 (Length: 601)
Name: NF16257_low_4
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 52 - 593
Target Start/End: Complemental strand, 38484952 - 38484407
Alignment:
| Q |
52 |
tttagacaatgaagcaatgcccttaaaaacttaccatttaccttaatttaaagtgaaatgaatcacattcatgtctaattttatgtacatgcatccaatt |
151 |
Q |
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| T |
38484952 |
tttagacaatgaagcaatgcccttaaaaacttaccatttaccttaatttaaagtgaaatgaatctcattcatgtctaattttatgtacatgcatccaatt |
38484853 |
T |
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| Q |
152 |
ttgtgagtaactactattacnnnnnnnnaggggatgagtaaaactgtaaaaggattgggaaagatgaatgtgattgtgaatgcacgtgaacgtagagggg |
251 |
Q |
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| T |
38484852 |
ttcagagtaactactattacttttttttaggggatgagtaaaactgtaaaaggattgggaaagataaatgtgattgtgaatgcacgtgaacgtagagggg |
38484753 |
T |
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| Q |
252 |
ctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaaaagtaaagtgaattccaaatggaagcacttatgcacacgtaaa |
351 |
Q |
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| T |
38484752 |
ctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaaaagtatagtgaattccaaatggaagcacttatgcacacgtaaa |
38484653 |
T |
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| Q |
352 |
agaagggaatccatcatgatcatcatcatcatgagtatgaccattaagcaatgatactacattacataa----tatacccaccaaaaatcatatcctctc |
447 |
Q |
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| T |
38484652 |
agaagggaatccatcatgatcatcatcatcatgagtatgaccattaagcaatgatactacattacataatacttatacccaccaaaaatcatatcctctc |
38484553 |
T |
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| Q |
448 |
ccccttcattttcccagacaaaatgaaatcattactcaccgcaaaatatgcatctcattcccttcctactttggtttttcacaaacctaatcattccttt |
547 |
Q |
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| T |
38484552 |
ccccttcattttcccagacaaaatgaaatcattactcaccgcaaaatatgcatctcattcccttcctactttggtttttcacaaacctaatcattccttt |
38484453 |
T |
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| Q |
548 |
atttcaaaagaaatcactctagtctctaaacccttctagtattatc |
593 |
Q |
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| T |
38484452 |
atttcaaaagaaaccactctagtctctaaacccttttagtattatc |
38484407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 38485009 - 38484979
Alignment:
| Q |
20 |
actgggtctgcgtaccaggtgttatgtgatt |
50 |
Q |
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| T |
38485009 |
actgggtctgcgtaccaggtgttatgtgatt |
38484979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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