View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16257_low_5 (Length: 574)

Name: NF16257_low_5
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16257_low_5
NF16257_low_5
[»] chr4 (15 HSPs)
chr4 (18-560)||(7875681-7876223)
chr4 (26-424)||(7890458-7890856)
chr4 (18-172)||(7871943-7872097)
chr4 (194-309)||(4322890-4323005)
chr4 (108-426)||(7888448-7888766)
chr4 (194-309)||(4126225-4126340)
chr4 (194-309)||(4343041-4343156)
chr4 (214-307)||(4351330-4351423)
chr4 (108-143)||(4135483-4135518)
chr4 (108-143)||(4322804-4322839)
chr4 (108-143)||(4343207-4343242)
chr4 (205-291)||(6589823-6589909)
chr4 (480-538)||(7890915-7890973)
chr4 (264-309)||(6792372-6792417)
chr4 (194-306)||(4358512-4358624)
[»] chr7 (5 HSPs)
chr7 (108-403)||(34727439-34727734)
chr7 (107-403)||(34735195-34735491)
chr7 (108-403)||(34730597-34730892)
chr7 (108-316)||(18929079-18929287)
chr7 (261-333)||(34717476-34717548)
[»] chr6 (4 HSPs)
chr6 (191-289)||(5423872-5423970)
chr6 (214-306)||(5431509-5431601)
chr6 (194-284)||(5068862-5068952)
chr6 (194-283)||(5356404-5356493)
[»] scaffold0729 (1 HSPs)
scaffold0729 (264-309)||(6212-6257)


Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Original strand, 7875681 - 7876223
Alignment:
Q  18 ctaatgacttcaagagccagcggcaatcccccacaatactctacagaatctttacaaagatcggcgtaactttccgttggacttggagttttgaatgcat 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875681 ctaatgacttcaagagccagcggcaatcccccacagtactctacataatctttacaaagatcggcgtaactttccgttggacttggagttttgaatgcat 7875780  T
Q  118 gccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttatcacttattgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7875781 gccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttatcacttgttgt 7875880  T
Q  218 gataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatatcttc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7875881 gataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcatgtacaagaaatatcttc 7875980  T
Q  318 ctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaagctgccgctgta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875981 ctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaagctgccgctgta 7876080  T
Q  418 aagaaacttggccatcactacattcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgtaactcatttgatttcaagtggctttggc 517  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7876081 aagaaacttggccatcactacactcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgtaactcatttgatttcaagtggctttggc 7876180  T
Q  518 gattgttgttttaccaaccccgtttgtctcccatacccctatg 560  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  7876181 gattgttgttttaccaaccccatttgtcccccatacccctatg 7876223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 26 - 424
Target Start/End: Original strand, 7890458 - 7890856
Alignment:
Q  26 ttcaagagccagcggcaatcccccacaatactctacagaatctttacaaagatcggcgtaactttccgttggacttggagttttgaatgcatgccaacta 125  Q
    ||||||||| | |||||| |||||||| ||||| |||  |||| ||||||| || |||||||||||  | |||||||||||| |||||||||||||||||    
T  7890458 ttcaagagctaccggcaaccccccacagtactcaacaacatctctacaaaggtcagcgtaactttctttaggacttggagttctgaatgcatgccaacta 7890557  T
Q  126 agaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttatcacttattgtgataatta 225  Q
    | ||||| ||||||||||||| |||||||||||||||||||||| | | | |||| || |||  ||| ||||||||||||||||||| |||| |||| ||    
T  7890558 aaaagcttaagagattcagtattgtccatatatttcattctatacacatgatcaagttgaaggttacgaagtatatgtttatcacttgttgtaataacta 7890657  T
Q  226 ttctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatatcttcctatggcg 325  Q
    ||||||| |||||||||||||| ||| ||  ||||||||||||||||||||| ||||||||||||| |  ||||||||||||||||| |||| ||||||     
T  7890658 ttctacttccatgaccaaaccaatcacgatcaccacacaaagcattcaactgttccaatttattcacaccgtcaagtacaagaaataccttcttatggca 7890757  T
Q  326 aagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaagctgccgctgtaaagaaac 424  Q
    ||| ||| ||  ||||| | | ||||||||||||||||||| ||| |||||||||||  ||||| |||| ||| ||||||| || ||||| ||||||||    
T  7890758 aaggcttctctgtaatatcttctttcctgattcaactgtatctatatgtatctttgttgttttgcagatgtctaaaagaagttgtcgctggaaagaaac 7890856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 7871943 - 7872097
Alignment:
Q  18 ctaatgacttcaagagccagcggcaatcccccacaatactctacagaatctttacaaagatcggcgtaactttccgttggacttggagttttgaatgcat 117  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7871943 ctaatgacttcaagagccagcgacaatcccccacagtactctacataatctttacaaagatcggcgtaactttccgttggacttggagttttgaatgcat 7872042  T
Q  118 gccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatat 172  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  7872043 gccaaccaagaagctcacgagattcagtaatgtccatatatttcattctatatat 7872097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 4322890 - 4323005
Alignment:
Q  194 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 293  Q
    ||||||||| ||||| ||  ||||||| ||||||||||||||  || ||||||| | |  ||| |||||||||||||| | |||||||| |||||||| |    
T  4322890 aagtatatgcttatctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctggtccagtttattcaca 4322989  T
Q  294 ttgtcaagtacaagaa 309  Q
    | ||||||||||||||    
T  4322990 tcgtcaagtacaagaa 4323005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 426
Target Start/End: Original strand, 7888448 - 7888766
Alignment:
Q  108 ttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttat 207  Q
    ||||||||||||||| ||| |||||| ||||||||| |  | ||||| |  |||||||| |||| | |||| |||| ||| ||||  |||| ||  | ||    
T  7888448 ttgaatgcatgccaattaaaaagctctagagattcactgctatccatttccttcattctgtatacatggtcgacttcaagcctactgagtaaatcatcat 7888547  T
Q  208 cacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaag 307  Q
    | ||| ||||||| | ||||||||| || | ||||||||| |   ||   ||||||||||||||||| || ||||||||||||| ||  || | ||||||    
T  7888548 cccttgttgtgatgagtattctacttcccttaccaaaccattttcgatctccacacaaagcattcaattgatccaatttattcacatcatcgattacaag 7888647  T
Q  308 aaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaagc 407  Q
    |||||||||  |    | |||||||| |  ||||| | ||||||||||||||||||  | ||||| |||||||||  ||||| |||| ||  |||||||     
T  7888648 aaatatctttttcgaacaaagtctttcctgtaatatcttttttcctgattcaactgagtctatctttatctttgtagttttgcagatgtcaaaaagaagt 7888747  T
Q  408 tgccgctgtaaagaaactt 426  Q
     |  |||||||||||||||    
T  7888748 cgttgctgtaaagaaactt 7888766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 4126225 - 4126340
Alignment:
Q  194 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 293  Q
    ||||||||| ||||| ||  | ||||| ||||||||||| ||  || ||||||| | |  ||| |||||||||||||| |  |||||||||||||||| |    
T  4126225 aagtatatgcttatccctggtcgtgatgattattctactccctggagcaaaccatttacaacttccacacaaagcattgagttggtccaatttattcaca 4126324  T
Q  294 ttgtcaagtacaagaa 309  Q
    | ||||||||||||||    
T  4126325 tcgtcaagtacaagaa 4126340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 4343156 - 4343041
Alignment:
Q  194 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 293  Q
    ||||||||| ||||| ||  ||||||| ||||||||||| ||  || |||||||   | |||| |||||||||||||| |  || ||||||||||||| |    
T  4343156 aagtatatgcttatccctggttgtgatgattattctactccctggagcaaaccatctacgacttccacacaaagcatttagttgatccaatttattcaca 4343057  T
Q  294 ttgtcaagtacaagaa 309  Q
    | ||||||||||||||    
T  4343056 tcgtcaagtacaagaa 4343041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 4351423 - 4351330
Alignment:
Q  214 ttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaag 307  Q
    ||||||| ||||||||||| ||| || ||||||| | |  ||| |||||||||| ||| |  |||||||||||||||| || ||||||||||||    
T  4351423 ttgtgatgattattctactcccaggagcaaaccatttacaacttccacacaaagtattaagttggtccaatttattcacatcgtcaagtacaag 4351330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 4135483 - 4135518
Alignment:
Q  108 ttgaatgcatgccaactaagaagctcaagagattca 143  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4135483 ttgaatgcatgccaactaaaaagctcaagagattca 4135518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 4322804 - 4322839
Alignment:
Q  108 ttgaatgcatgccaactaagaagctcaagagattca 143  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4322804 ttgaatgcatgccaactaaaaagctcaagagattca 4322839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 4343242 - 4343207
Alignment:
Q  108 ttgaatgcatgccaactaagaagctcaagagattca 143  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4343242 ttgaatgcatgccaactaaaaagctcaagagattca 4343207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 6589823 - 6589909
Alignment:
Q  205 tatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattca 291  Q
    |||| ||| ||||||| ||||||||||| ||  |||||||||| ||| | |||||||||||||| || | ||| ||||||| |||||    
T  6589823 tatctcttgttgtgattattattctactccccggaccaaaccaatcacggctaccacacaaagcctttagctgctccaattcattca 6589909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 538
Target Start/End: Original strand, 7890915 - 7890973
Alignment:
Q  480 tcaaaattgtaactcatttgatttcaagtggctttggcgattgttgttttaccaacccc 538  Q
    |||||| || |||||||||||||  |||||||||| || ||| ||||||||||||||||    
T  7890915 tcaaaagtgaaactcatttgattataagtggctttagcaattattgttttaccaacccc 7890973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 6792417 - 6792372
Alignment:
Q  264 aaagcattcaactggtccaatttattcaaattgtcaagtacaagaa 309  Q
    |||||||||||||| ||||||||||  | |||||||||||||||||    
T  6792417 aaagcattcaactgctccaatttatcaacattgtcaagtacaagaa 6792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 4358624 - 4358512
Alignment:
Q  194 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 293  Q
    ||||||||| ||||| ||  ||||||| || |||||||| ||  || ||||||| | |  ||| |||||||||||||| |  |||||||||||||| | |    
T  4358624 aagtatatgcttatccctagttgtgatgataattctacttcctggagcaaaccatttacaacttccacacaaagcatttagttggtccaatttattgaca 4358525  T
Q  294 ttgtcaagtacaa 306  Q
    | |||||||||||    
T  4358524 tcgtcaagtacaa 4358512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 34727439 - 34727734
Alignment:
Q  108 ttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttat 207  Q
    ||||||||||||||||||| |||||||||||||||| |    ||||| | |||||||||||| | |  |||||||| ||| |||| ||||| ||  | ||    
T  34727439 ttgaatgcatgccaactaaaaagctcaagagattcattgccatccatttctttcattctatacacatagtcaactttaagcctactaagtaaatcatcat 34727538  T
Q  208 cacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaag 307  Q
    | ||| | ||||| ||||||||||| || | ||||||||| ||| |||| ||||||||||||||||| ||||||| |||||||| || |||||| |||||    
T  34727539 ctcttgtagtgatcattattctacttccttcaccaaaccattcatgacttccacacaaagcattcaattggtccactttattcacatcgtcaagcacaag 34727638  T
Q  308 aaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag 403  Q
    ||||||| || |||| |||||||||| |   |||| ||||||||||||||||||||| | ||||| ||| |||||  ||||||||||||| |||||    
T  34727639 aaatatcctcttatgacgaagtctttcctgcaatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag 34727734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 107 - 403
Target Start/End: Original strand, 34735195 - 34735491
Alignment:
Q  107 tttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgttta 206  Q
    |||||||||||||||||||| |||||||||||||||| |  ||||||| | |||||||||||| | |  || ||||| ||| |||| ||||| ||  | |    
T  34735195 tttgaatgcatgccaactaaaaagctcaagagattcattgctgtccatttctttcattctatacacatagtgaactttaagcctaccaagtaaatcatca 34735294  T
Q  207 tcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaa 306  Q
    || ||| ||||||| ||||||||||| || | |||||||||  |  |||| || |||||||||||||| ||||||| |||||||| || ||| || ||||    
T  34735295 tctcttgttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattggtccagtttattcacatcgtccagcacaa 34735394  T
Q  307 gaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag 403  Q
    |||||||| || |||| |||||||||| |   |||| ||||||||||||||||||||||| ||||| ||| |||||  ||||||||||||| |||||    
T  34735395 gaaatatcctcttatgacgaagtctttcctgcaatatcatttttcctgattcaactgtatctatctttatttttgttgttttgtagatatcagaaag 34735491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 34730597 - 34730892
Alignment:
Q  108 ttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttat 207  Q
    |||||| |||||||||| | |||||||||||||||| |  ||||||| | |||||||||||| | |  || ||||| ||| |||| ||||| ||  | ||    
T  34730597 ttgaatacatgccaactgaaaagctcaagagattcattgctgtccatttctttcattctatacacatagtgaactttaagcctaccaagtaaatcatcat 34730696  T
Q  208 cacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaag 307  Q
    | ||| ||||||| ||||||||||| || | |||||||||  |  |||| || |||||||||||||| ||||||| |||||||| || ||| || |||||    
T  34730697 ctcttgttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattggtccagtttattcacatcgtccagcacaag 34730796  T
Q  308 aaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag 403  Q
    ||||||| || |||| | |||||||| |   |||| ||||||||||||||||||||| | ||||| ||| |||||  ||||||||||||| |||||    
T  34730797 aaatatcctcttatgacaaagtctttcctgcaatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag 34730892  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 108 - 316
Target Start/End: Complemental strand, 18929287 - 18929079
Alignment:
Q  108 ttgaatgcatgccaactaagaagctcaagagattcagtaatgtccatatatttcattctatatataaggtcaacttaaagactacaaagtatatgtttat 207  Q
    ||||||||||||||||||| |||||||||||||||| |   |||||| | |||||||||||| | |  || ||||| ||| |||| ||||| ||  | ||    
T  18929287 ttgaatgcatgccaactaaaaagctcaagagattcattgtcgtccatttctttcattctatacacatagtgaactttaagcctactaagtaaatcatcat 18929188  T
Q  208 cacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaag 307  Q
    | ||| ||||||| ||||||||||| || | ||||||||| ||  |||| || |||||||||||||| ||||||  |||||||| || ||| |  |||||    
T  18929187 ctcttgttgtgatgattattctacttccttcaccaaaccattcgtgacttccgcacaaagcattcaattggtcctctttattcacatcgtccaacacaag 18929088  T
Q  308 aaatatctt 316  Q
    |||||||||    
T  18929087 aaatatctt 18929079  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 34717476 - 34717548
Alignment:
Q  261 cacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttt 333  Q
    ||||||||||||||  | |||| |||||||| || ||| || |||||||||||| || |||||||||||||||    
T  34717476 cacaaagcattcaatggctccagtttattcacatcgtccagcacaagaaatatcctcgtatggcgaagtcttt 34717548  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 5423970 - 5423872
Alignment:
Q  191 acaaagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttatt 289  Q
    ||||||||||||| |||| ||| ||||||||||||||||||| ||   ||||||||| | | |||| ||||||||||||||||  ||||||||| ||||    
T  5423970 acaaagtatatgtctatctcttgttgtgataattattctactccccgaaccaaaccatttatgacttccacacaaagcattcagttggtccaatgtatt 5423872  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 5431601 - 5431509
Alignment:
Q  214 ttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaa 306  Q
    ||||||||||||||||||| ||   ||||||||| | | |||| ||||||||||||| |||||| ||||| | ||||| || |||||||||||    
T  5431601 ttgtgataattattctactccctaaaccaaaccaattacgacttccacacaaagcatccaactgttccaactcattcacatcgtcaagtacaa 5431509  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 5068862 - 5068952
Alignment:
Q  194 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaat 284  Q
    |||||||||| |||| ||| | ||||| ||||||||||| ||   ||||||||||| | |||| |||||||||||||| |  |||||||||    
T  5068862 aagtatatgtctatcccttgtggtgatgattattctacttcccgaaccaaaccacttacgacttccacacaaagcatttagttggtccaat 5068952  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 5356404 - 5356493
Alignment:
Q  194 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaa 283  Q
    |||||||| | |||| ||| ||||||||||||||||||| ||   ||||||||| | | |||| ||||||||| ||||||  ||||||||    
T  5356404 aagtatatatctatctcttgttgtgataattattctactccccaaaccaaaccaatgatgactgccacacaaaacattcagttggtccaa 5356493  T

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Target: scaffold0729 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 6212 - 6257
Alignment:
Q  264 aaagcattcaactggtccaatttattcaaattgtcaagtacaagaa 309  Q
    |||||||||||||| ||||||||||  | |||||||||||||||||    
T  6212 aaagcattcaactgctccaatttatcaacattgtcaagtacaagaa 6257  T

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