View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_7 (Length: 534)
Name: NF16257_low_7
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 37 - 517
Target Start/End: Original strand, 33479682 - 33480165
Alignment:
| Q |
37 |
agaggaaatgtatgggaacttttatttagttactttgacccgttaactgagctccaaatcttctaattaatctactccattattaggatgtcttcttatt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33479682 |
agaggaaatgtatgggaacttttatttagttactttgacccgttaaatgagctctaaatcttctaattaatctactctattattaggatgtcttcttatt |
33479781 |
T |
|
| Q |
137 |
ctctcactttttcaaccaaagctttacccctttctctctcaatcgcaaattatctcctctcatgcatagtacgtactttcatttcccctgcaaactactc |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
33479782 |
ctctcactttttcaaccaaagctttacccctttctctctcaatcgcaaattatctcctctcatgcatagtacgtactttcatttcccatgcaaactacgc |
33479881 |
T |
|
| Q |
237 |
cctctcttcttttctaataccaccccttcaattcaaactcactactttctaccctatcctcacccaccgctccccatactcccatggaggagcgggcctc |
336 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33479882 |
cctctcttcttttctaataccacccctccaattcaaaatcaacactttctaccctatcctcacccgccgctccccatactcccatggaggagcgggcctc |
33479981 |
T |
|
| Q |
337 |
accgccacca---cctcctccgcatgattctaattctaaacctcaattacctaacattaaccgcaacaccttcgttgtccaagtccctaaggaccaaatc |
433 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33479982 |
accgccaccacctcctcctccgcatgattctaattctaaacctcaattacctaacattaaccgcaacaccttcgttgtccaagtccctaaggaccaaatc |
33480081 |
T |
|
| Q |
434 |
taccgcgttccaccacctgaaaatgcgcgccttgctgagcaacgtcgaagctctccaccaaaggagaaaagtcggatgtgttgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33480082 |
taccgcgttccaccacctgaaaatgcgcgccttgctgagcaacgtcgaagctctccaccaaaggagaaaaatcggatgtgttgt |
33480165 |
T |
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