View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16258_high_13 (Length: 341)
Name: NF16258_high_13
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 21584706 - 21584439
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21584706 |
atgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
21584607 |
T |
|
| Q |
117 |
ttatggattcggaggttgaagacgatgaattgcaacatgtgttgatgtgattcctctaaataatgcttaatttggttgttaattaggtttgttttgtttc |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
21584606 |
ttatggattcggaggttgaagaagatgaattgtaacatgtgttaatgtgaatcctctaaataatgcttaatttggttgttaattaggttt-tgttgtttc |
21584508 |
T |
|
| Q |
217 |
tttgtaagtttaacaagattgaaatctaatgaagtaatcttttatgttgaattatgattttactttgtg |
285 |
Q |
| |
|
||||||||||||| | | ||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
21584507 |
tttgtaagtttaaaatggttgaaatctaatgaaataatcttttatggtgaattatgattctactttgtg |
21584439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 24497368 - 24497250
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
||||||| |||||||| ||||| ||| ||||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
24497368 |
atgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccct |
24497269 |
T |
|
| Q |
117 |
ttatggattcggaggttga |
135 |
Q |
| |
|
||||| || ||||||||| |
|
|
| T |
24497268 |
ctatggttttggaggttga |
24497250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 25085111 - 25085232
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
||||||| |||||||| ||||| ||| ||||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||| || |
|
|
| T |
25085111 |
atgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccct |
25085210 |
T |
|
| Q |
117 |
ttatggattcggaggttgaaga |
138 |
Q |
| |
|
||||| || |||||||||||| |
|
|
| T |
25085211 |
ctatggttttggaggttgaaga |
25085232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 24919995 - 24919877
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
|||| ||||||||||| || || ||| ||||||| || ||||||||||| ||||| || |||||||| || ||||||||||||||||| |||||||| || |
|
|
| T |
24919995 |
atgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccct |
24919896 |
T |
|
| Q |
117 |
ttatggattcggaggttga |
135 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24919895 |
ctatggattcggaggttga |
24919877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 31825658 - 31825548
Alignment:
| Q |
25 |
cgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggat |
124 |
Q |
| |
|
||||||||||| || ||| ||||||| || ||||||||||| || || || ||||||||||| ||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
31825658 |
cgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggat |
31825559 |
T |
|
| Q |
125 |
tcggaggttga |
135 |
Q |
| |
|
||||||||||| |
|
|
| T |
31825558 |
tcggaggttga |
31825548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 24923569 - 24923448
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
|||| ||||||||||| || || ||| ||||||| || ||||||||||| ||||| || ||||||||||| |||||||||||||| || |||||||| || |
|
|
| T |
24923569 |
atgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccct |
24923470 |
T |
|
| Q |
117 |
ttatggattcggaggttgaaga |
138 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
24923469 |
ctatggatttggaggttgaaga |
24923448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 24982127 - 24982240
Alignment:
| Q |
25 |
cgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggat |
124 |
Q |
| |
|
|||||||| ||||| ||| ||||||| || |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| || ||||| | |
|
|
| T |
24982127 |
cgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtt |
24982226 |
T |
|
| Q |
125 |
tcggaggttgaaga |
138 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
24982227 |
tcggtggttgaaga |
24982240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 31825414 - 31825354
Alignment:
| Q |
216 |
ctttgtaagttt-aacaagattgaaatctaatgaagtaatcttttatgttgaattatgatt |
275 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
31825414 |
ctttgtaagttttaacaagattgaaatctaatgaagtgactgtttatggtgaattatgatt |
31825354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 24497160 - 24497094
Alignment:
| Q |
210 |
ttgtttctttgtaagttt-aacaagattgaaatctaatgaagtaatcttttatgttgaattatgatt |
275 |
Q |
| |
|
||||| |||||||||||| ||||||||| |||||||||||||||| ||| || |||||||||||| |
|
|
| T |
24497160 |
ttgttcctttgtaagtttcaacaagatttgaatctaatgaagtaattatttctggtgaattatgatt |
24497094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 32776690 - 32776641
Alignment:
| Q |
211 |
tgtttctttgtaagttt-aacaagattgaaatctaatgaagtaatctttt |
259 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
32776690 |
tgttcctttgtaagttttaacaagatttaaatcaaatgaagtaatctttt |
32776641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 10575471 - 10575588
Alignment:
| Q |
28 |
gatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcg |
127 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| || | ||||| ||||||||||| || ||||| |||| |
|
|
| T |
10575471 |
gatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcg |
10575570 |
T |
|
| Q |
128 |
gaggttgaagacgatgaa |
145 |
Q |
| |
|
| ||||||||| |||||| |
|
|
| T |
10575571 |
gtggttgaagatgatgaa |
10575588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 354482 - 354551
Alignment:
| Q |
21 |
gattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttat |
90 |
Q |
| |
|
|||| ||||||| ||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
354482 |
gatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgtttat |
354551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 39954954 - 39954861
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag |
110 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||| |||||||| ||||| || || ||||||||||| |||||| | |||||||| ||||| |
|
|
| T |
39954954 |
atgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag |
39954861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 10575614 - 10575687
Alignment:
| Q |
213 |
tttctttgtaagttt-aacaagattgaaatctaatgaagtaatcttttatgttgaattatgattttactttgtg |
285 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| | ||||| || ||||||||||||||| |||||| |
|
|
| T |
10575614 |
tttctttgtaagttttaacaagattgaaattgaatgaaatgctctttcttggtgaattatgattttaatttgtg |
10575687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 10580895 - 10580928
Alignment:
| Q |
57 |
gaggaagactgtgactgctatggatgttgtttat |
90 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
10580895 |
gaggaagactctgactgctatggatgttgtttat |
10580928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 14261130 - 14261014
Alignment:
| Q |
28 |
gatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcg |
127 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| || | ||||| |||| |
|
|
| T |
14261130 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcg |
14261031 |
T |
|
| Q |
128 |
gaggttgaagacgatga |
144 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
14261030 |
gaggttgaagaagatga |
14261014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 41027645 - 41027753
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
|||| ||||||||||| ||||| ||| | ||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| || || |
|
|
| T |
41027645 |
atgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaaggactct |
41027744 |
T |
|
| Q |
117 |
ttatggatt |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
41027745 |
ttatggatt |
41027753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 30012130 - 30012191
Alignment:
| Q |
61 |
aagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatgg |
122 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | |||||||||||||| || |||||||| |
|
|
| T |
30012130 |
aagacagtgactgctatggatgtggtttatgcgctcaagaggcaaggaaggaccctttatgg |
30012191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 26358604 - 26358552
Alignment:
| Q |
70 |
actgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatgg |
122 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| || |||||||| |
|
|
| T |
26358604 |
actgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatgg |
26358552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 22898626 - 22898734
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
|||||||| | ||||| || || ||| ||||||| || || |||||||| || |||||||||||||| |||||||| | ||||| || |||||||| || |
|
|
| T |
22898626 |
atgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct |
22898725 |
T |
|
| Q |
117 |
ttatggatt |
125 |
Q |
| |
|
||| ||||| |
|
|
| T |
22898726 |
ttacggatt |
22898734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 22950294 - 22950402
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
|||||||| | ||||| || || ||| ||||||| || || |||||||| || |||||||||||||| |||||||| | ||||| || |||||||| || |
|
|
| T |
22950294 |
atgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct |
22950393 |
T |
|
| Q |
117 |
ttatggatt |
125 |
Q |
| |
|
||| ||||| |
|
|
| T |
22950394 |
ttacggatt |
22950402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 53328787 - 53328903
Alignment:
| Q |
17 |
atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct |
116 |
Q |
| |
|
|||||||||||||||| || || ||| | |||||||| | | |||||||| ||||| |||||||||||||| ||| | |||||||| ||||| || || |
|
|
| T |
53328787 |
atgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactct |
53328886 |
T |
|
| Q |
117 |
ttatggattcggaggtt |
133 |
Q |
| |
|
||| || ||||| |||| |
|
|
| T |
53328887 |
ttacggtttcgggggtt |
53328903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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