View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_high_18 (Length: 302)
Name: NF16258_high_18
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 8198107 - 8198395
Alignment:
| Q |
1 |
aataataagaaagtatgcacttcaacnnnnnnnttatattctaagcagaagcaataaccatagtcatgtattaaagacagattcacctcataaatctaca |
100 |
Q |
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| T |
8198107 |
aataataagaaagtatgcacttcaacaaaaaaattatattctaagcagaagcaataaccatagtcatgtattaaagacagattcacctcataaatctaca |
8198206 |
T |
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| Q |
101 |
gataattagcaattatgaaataaagaacgaaaaccctcttcacataaatttaccatatttaaaatacaacttttaaaaggaaaaattcatgtgtttcgat |
200 |
Q |
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| T |
8198207 |
gataattagcaattatgaaataaagaatgaaaaccctcttcacataaatttaccatatttaaaatacaacttttaaaaggaaaaattcatgtgtttcgat |
8198306 |
T |
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| Q |
201 |
ccatgaacataaattcttcaaatagacaagctcggatcaaacttttgcccaataactagaagacatttcccctaaagaacaaccatact |
289 |
Q |
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| T |
8198307 |
ccatgaacataaattcttcaaatagacaagctcggatcaaacttttgcccaataactagaagacatttcccctaaagaacaaccatact |
8198395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 36 - 289
Target Start/End: Original strand, 42355271 - 42355524
Alignment:
| Q |
36 |
atattctaagcagaagcaataaccatagtcatgtattaaagacagattcacctcataaatctacagataattagcaattatgaaataa-agaacgaaaac |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||| | || ||||| |
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| T |
42355271 |
atattctaagcagaagcaataaccatagtcatgtattaaggacagattaacctcataaatctacagatatttagcaattatcaaataataaaatgaaaaa |
42355370 |
T |
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| Q |
135 |
cctcttcacataaatttaccatatttaaaatacaacttttaaaaggaaaaattcatgtgtttcgatccatgaacataaattcttcaaatagacaagctcg |
234 |
Q |
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|||| | |||| |||||| ||||||||||||| ||| | |||||||||| |||| |||| | |||||| |||||||| |||||||||||||||| | |
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| T |
42355371 |
cctccttacat-aatttatcatatttaaaatataacaactctaaggaaaaatccatgcatttcaacccatgatcataaatttttcaaatagacaagcttg |
42355469 |
T |
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| Q |
235 |
gatcaaacttttgcccaataactagaagacatttcccctaaagaacaaccatact |
289 |
Q |
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||||| |||| ||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
42355470 |
gatcacacttacgcctaataattaaaagacatttcccctaaagaacaaccatact |
42355524 |
T |
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