View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16258_high_19 (Length: 278)

Name: NF16258_high_19
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16258_high_19
NF16258_high_19
[»] chr3 (3 HSPs)
chr3 (10-262)||(38184256-38184508)
chr3 (10-262)||(38179587-38179839)
chr3 (10-262)||(38169773-38170025)
[»] chr8 (2 HSPs)
chr8 (25-125)||(35060794-35060894)
chr8 (28-125)||(35054056-35054153)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 38184256 - 38184508
Alignment:
Q  10 ggaacccctaaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacc 109  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38184256 ggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacc 38184355  T
Q  110 atttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38184356 atttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatc 38184455  T
Q  210 tctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaattt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38184456 tctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaattt 38184508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 38179587 - 38179839
Alignment:
Q  10 ggaacccctaaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacc 109  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38179587 ggaacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcgacaaaacctccacctgactacacc 38179686  T
Q  110 atttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatc 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38179687 atttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatc 38179786  T
Q  210 tctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaattt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38179787 tctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaattt 38179839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 38169773 - 38170025
Alignment:
Q  10 ggaacccctaaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacc 109  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38169773 ggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacc 38169872  T
Q  110 atttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatc 209  Q
    |||| |||||||||||||| | |||  |||||||||||||||||||||| | ||||||   |||| | || ||||||||||||||    | ||||| |||    
T  38169873 attttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaattttttatc 38169972  T
Q  210 tctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaattt 262  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||| ||||||    
T  38169973 tctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaattt 38170025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 35060894 - 35060794
Alignment:
Q  25 aaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccatttcactatcttcc 124  Q
    ||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||   || || | ||||||||| |||  |||||| |||||||||||||    
T  35060894 aaactttccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaatgaagaatgggaaagaacctccacttgagaacaccacttcactatcttcc 35060795  T
Q  125 c 125  Q
    |    
T  35060794 c 35060794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 35054153 - 35054056
Alignment:
Q  28 ctttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccatttcactatcttccc 125  Q
    ||||||||||| |||||||| ||||| || |||| |||||||||||| ||| | || || | || |||||  |||  |||||||||||||||||||||    
T  35054153 ctttccaaagttgaattccaaccacagtgtgtcaaaaaacaacccaatgaaggatgtgaaagaatctccatttgagaacaccatttcactatcttccc 35054056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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