View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_high_2 (Length: 517)
Name: NF16258_high_2
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 30 - 509
Target Start/End: Original strand, 35710379 - 35710858
Alignment:
| Q |
30 |
gtcaaaagataagtaagatagaaccatggattttcaaacatgtgagatgcaaatcccacctactcccaaactagactatgttaggtgggcagggaggctg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35710379 |
gtcaaaagataagtaagatagaaccatggattttcaaacatgtgagatgcaaatcccacctactcccaaactagactatgttaggtgggcagggaggctg |
35710478 |
T |
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| Q |
130 |
g----gctccacctgttgactctactaaactccacaaccacatgtactactaccagcgaaggcagccagaattgacaacattgaagttttgaataaccat |
225 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35710479 |
gctgggctccacctgttgactctactaaactccacaaccacatgtactactaccagcgaaggcagccagaattgacagcattgaagttttgaataaccat |
35710578 |
T |
|
| Q |
226 |
tgatgtttgcttacaattacatttttgaagttggaagaaataaatgggaaaaaagagcataatggagttgggtgtcgacgattttgtaaaggctggttta |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35710579 |
tgatgtttgcttacaattacatttttgaagttggaagaaat----gggaaaaaagagcataatggagttgggtgtcgacgattttgtaaaagctggttta |
35710674 |
T |
|
| Q |
326 |
tcacctgctgaagccaatgaattaaaggaagtgttgctgtcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaag |
425 |
Q |
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|||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35710675 |
tcacctactgaagccaatgaattgaaggaagttttgctgtcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaag |
35710774 |
T |
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| Q |
426 |
tcctcaaaccatcataccctcatcccttgcatcagcttctctattataccatctataatgatcatcatcactcctcttcttctc |
509 |
Q |
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| T |
35710775 |
tcctcaaaccatcataccctcatcccttgcatcagcttctctattataccatctataatcatcatcatcactcctcttcttctc |
35710858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 260 - 509
Target Start/End: Complemental strand, 35520277 - 35520028
Alignment:
| Q |
260 |
aagaaataaatgggaaaaaagagcataatggagttgggtgtcgacgattttgtaaaggctggtttatcacctgctgaagccaatgaattaaaggaagtgt |
359 |
Q |
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|||||| |||||||||||||||| |||||||||||||| | || ||||||||||||| |||||||||| |||| |||||||||||||| |||||||||| |
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| T |
35520277 |
aagaaagaaatgggaaaaaagagtgtaatggagttgggtattgatgattttgtaaaggttggtttatcagctgccgaagccaatgaattgaaggaagtgt |
35520178 |
T |
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| Q |
360 |
tgctgtcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatca |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520177 |
tgctgtcactgccattgtcctcactctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatca |
35520078 |
T |
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| Q |
460 |
gcttctctattataccatctataatgatcatcatcactcctcttcttctc |
509 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35520077 |
gcttctctactataccatctataatgatcatcatcactcctcttcttctc |
35520028 |
T |
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