View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_high_23 (Length: 236)
Name: NF16258_high_23
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 8198042 - 8197826
Alignment:
| Q |
2 |
ttttgcttatttgttatgtgtaaacaaatatattttgaaaactgttatttttaggcctacaagatcatgaaggagcataagaatcctaaggttcttagtg |
101 |
Q |
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| T |
8198042 |
ttttgcttattttttatgtgtaaacaaatatattttgaaaactgttatttttaggcctacaagatcatgaaggagcataagaatcctaaggttcttagtg |
8197943 |
T |
|
| Q |
102 |
aggggattatgtggatggtttctgctgttgaggattttggtgtatcatatttaaagcttaaggtctgttatctgtttttctcttggcaatttaagttatc |
201 |
Q |
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| T |
8197942 |
aggggattatgtggatggtttctgctgttgaggattttggtgtatcatatttaaagcttaaggtctgttatctgtttttctcttggcaatttaagttatc |
8197843 |
T |
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| Q |
202 |
ttatctgtaattgcatg |
218 |
Q |
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||||||||||||||||| |
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| T |
8197842 |
ttatctgtaattgcatg |
8197826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 42355122 - 42354956
Alignment:
| Q |
53 |
taggcctacaagatcatgaaggagcataagaatcctaaggttcttagtgaggggattatgtggatggtttctgctgttgaggattttggtgtatcatatt |
152 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
42355122 |
taggcctacaaaatcatgaaggagcataagaatcctaaggttcttagtgaggggattttgtggatggtttctgctgttgacgattttggtgtatcacatt |
42355023 |
T |
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| Q |
153 |
taaagcttaaggtctgttatctgttt-ttctcttggcaatttaagttatcttatctgtaattgcatg |
218 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| || ||| |||||||| |||||||| |
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| T |
42355022 |
taaagcttaaggtctgttatctgtttatttttttggcaattgcagctatgttatctgtgattgcatg |
42354956 |
T |
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