View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_high_3 (Length: 434)
Name: NF16258_high_3
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 39920864 - 39921255
Alignment:
| Q |
19 |
tctatgacacatcctaagaagaaaattgtgattatctcatatataagtactgtagtatattggatagtgaaggctatta----ttagtttaatttcttga |
114 |
Q |
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| T |
39920864 |
tctatgacacatcctaagaagaaaattgtgattatctcatatataagtactgtagtattttggatagtgaaggctattaagtattagtttaatttcttga |
39920963 |
T |
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| Q |
115 |
atttttgtcattttcagccacaattagaaacacaccgtacatggactcatggactagtcactttaactaactaggaagtcaccattcagttaattttcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39920964 |
atttttgtcattttcagccacaattagaaacacaccgtacatggactcatggactagtcactttaactaactaggaagtcaccattcagttaattttcat |
39921063 |
T |
|
| Q |
215 |
ccttaaaagtaacatcacgccacaacaaacccatgttatgtgaacagtcttttctaaaagggtaaatacctttatccttgtttttctactacgtgacaaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39921064 |
ccttaaaagtaacatcacgccacaacaaacccatgttatgtgagcagtcttttctaaaagggtaaatacctttatcctagtttttctactacgtgacaaa |
39921163 |
T |
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| Q |
315 |
ttttgattcagcacgcttattgaaaggtcaatcctttgcattttgtttc----atatacatgatgaaccaaccatatatagcatgaactgat |
402 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39921164 |
ttttgattcagcacgcttactgaaaggtcaatcctttgcattttgtttcatatatatacatgatgaaccaaccatatatagcatgaactgat |
39921255 |
T |
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