View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_high_4 (Length: 428)
Name: NF16258_high_4
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 418
Target Start/End: Original strand, 31402902 - 31403305
Alignment:
| Q |
12 |
caatgagatgggtttctagtaagatattgatttacttagccttattcttgaaattatgagtagaaatagttttatgtgcatgcacatcaaattatacttg |
111 |
Q |
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| T |
31402902 |
caatgaggtgggtttctagtaagatattgatttacttagccttattcttgaaattatgagtagaaatagttttatgcgcatgcacatcaaattatatatg |
31403001 |
T |
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| Q |
112 |
ttaaggatatttagagttaattggaaattatgtgagaataatattggactaggaattcctttcnnnnnnntaataatattggactaggaatttttcatga |
211 |
Q |
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| T |
31403002 |
ttaaggatatttagagttaattggaaatcatgtgagaataatattggactaggaattcctttcaaaaaaataataatattggactaggaatttttcatga |
31403101 |
T |
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| Q |
212 |
gaagtattatcattttatggcattgaatgtaacttgaaccaagtgttcgaactgaatttccctaaatatatgagtattattgacaaaaagaaatgttaac |
311 |
Q |
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| T |
31403102 |
gaagtat---cattttatggcattgaatgtaacttgaaccaagtgttcgaactgaatttgcttaaatatatgagtattactgacaaaaaaaaatgttaac |
31403198 |
T |
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| Q |
312 |
aataatctcttcttaaaattatctctaacacttattctcttatttaatgaaactcatgtggttttcaacattttatgtgactcattttcaaagtatgaaa |
411 |
Q |
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|||||||||| |||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31403199 |
gataatctctttttaaaactatctctaacacttgctctcttatgtgatgaaactcatgtggttttcaacattttatgtgacccattttcaaagtatgaaa |
31403298 |
T |
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| Q |
412 |
ttgatga |
418 |
Q |
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|| |||| |
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| T |
31403299 |
tttatga |
31403305 |
T |
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