View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16258_high_7 (Length: 400)
Name: NF16258_high_7
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 159 - 390
Target Start/End: Original strand, 28725385 - 28725612
Alignment:
| Q |
159 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagatat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725385 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagat-- |
28725482 |
T |
|
| Q |
259 |
atggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725483 |
--ggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
28725580 |
T |
|
| Q |
359 |
ttgtctctatatttgtttagtttcttctcact |
390 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
28725581 |
ttgtctctatatttgtttagtttcttgtcact |
28725612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 28725226 - 28725292
Alignment:
| Q |
19 |
gcttgacatgagaagaacaaggattaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725226 |
gcttgacatgagaagaacaaggattaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
28725292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 28727873 - 28728005
Alignment:
| Q |
159 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagt-aatcttattttctggtgaagata |
257 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| | |||||||||| ||| ||||||| |
|
|
| T |
28727873 |
tcaggtgagtcaatcatcttcaactca--aactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagat- |
28727969 |
T |
|
| Q |
258 |
tatggcttactttgtagaattaattgcttgcttctttta |
296 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
28727970 |
---ggcttactttatagaattaattacttgcttctttta |
28728005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 28734087 - 28734221
Alignment:
| Q |
159 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaa-gtaatcttattttctggtgaagata |
257 |
Q |
| |
|
||||||| |||||| ||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| |
|
|
| T |
28734087 |
tcaggtgagtcaatcatcttcagctca--aactatctacagcattattgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag--- |
28734181 |
T |
|
| Q |
258 |
tatggcttac--tttgtagaattaattgcttgcttctttta |
296 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
28734182 |
-atggcttactttttatagaattaattacttgcttctttta |
28734221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University