View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_high_9 (Length: 378)
Name: NF16258_high_9
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 204 - 371
Target Start/End: Original strand, 39801861 - 39802028
Alignment:
| Q |
204 |
ggagttcaatattgtgtggatatttagataaatgttagtatcattagtaatatcaaatgtcaacttaattaaatgattcttgaaaaaagcttaattaaat |
303 |
Q |
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| T |
39801861 |
ggagttcaatattgtgtggatatttagataaatgttagtatcattagtaatatcaaatgtcaacttaattaaatgattcttgaaaaaagcttaattaaat |
39801960 |
T |
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| Q |
304 |
gatgccaaaatcttgtttggttttacgtctctttctactctttacacctttgaatataagtataattt |
371 |
Q |
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| T |
39801961 |
gatgtcacaatcttgtttggttttacgtctctttctactctttacacctttgaatataagtataattt |
39802028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 39801673 - 39801807
Alignment:
| Q |
16 |
accagaacttctttttgggtattatttaaaggaaattaaatttttaatattttgacatatagactaatgcatatacaaataattagcattggtcagttgt |
115 |
Q |
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| T |
39801673 |
accagaacttttttttgggtattattttaaggaaattaaatttttaatattttgacatatagactaatgcatatacaaataattatcattggccagttgt |
39801772 |
T |
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| Q |
116 |
cacttaatttaatgtggtcactacaaattattgag |
150 |
Q |
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| T |
39801773 |
cacttaatttaatgtggtcactaaaaattattgag |
39801807 |
T |
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