View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_low_1 (Length: 540)
Name: NF16258_low_1
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 34 - 487
Target Start/End: Complemental strand, 50909732 - 50909285
Alignment:
| Q |
34 |
taaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgcccccaaaattgatttataaatcaatcttaattcttacacatctt |
133 |
Q |
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| T |
50909732 |
taaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgtcccccaaattgatttataaatcaatcttaattcttacacatctt |
50909633 |
T |
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| Q |
134 |
gattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaaattcataatttttaacatattcaaatttcaaaatctttgt |
233 |
Q |
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| T |
50909632 |
gattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaaattcataatttttaacatattcaaatttcaaaatctttgt |
50909533 |
T |
|
| Q |
234 |
gtaaaatacattttttaagacttttacacatccggactttgaaattcgaatgcgtgaaattcagttttctcgttgaaatatgctgccatagtgtatgcgt |
333 |
Q |
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| T |
50909532 |
gtaaaatacattttttaagacttttacacatccggactttgaaattcgaatgcgtgaaattcacttttctcgttgaaatatgctgccatagtgtatgcgt |
50909433 |
T |
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| Q |
334 |
ctctatgctgaatctcaagttcaaacaagtggagaccacattttctatgtgtgcaagcaagcagttgactagtttttactaattctcttacctgatctgt |
433 |
Q |
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| T |
50909432 |
ctctatgctgaatctcaagttcaaacaagttgagaccacattttctgtgt------gcaagcagttgactagtttttactaattctcttacctgatctgt |
50909339 |
T |
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| Q |
434 |
tgtgttgttgctgaaggaagaaacttattttggaccttttactgtgcaaattat |
487 |
Q |
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| T |
50909338 |
tgtgttgttgctgaaggaagaaacttattttggaccttttactgtgcaaattat |
50909285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 522
Target Start/End: Complemental strand, 50908938 - 50908901
Alignment:
| Q |
486 |
atcttccctt-ctaattgatctggacatggggcggttt |
522 |
Q |
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| T |
50908938 |
atcttccctttctaattgatctggacatggggcggttt |
50908901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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