View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_low_12 (Length: 370)
Name: NF16258_low_12
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 5680160 - 5680449
Alignment:
| Q |
18 |
aaacattctaaaattactctagtagtaaaataagaaaataaaaataatgtcacacacatagtcaaacatgctaaaattactctagtagtcccct-nnnnn |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
5680160 |
aaacattctaaaattactctagtagtaaaataagaaaataaaaataatgtcacacacataggcaaacatgctaaaattacactagtagtcccctaaaaaa |
5680259 |
T |
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| Q |
117 |
nnttactctagtagtcaaaataaaaagatttatcacaaaattcgttttcgaaagttctttaaaaacaaactttagttccaacttttatattg--nnnnnn |
214 |
Q |
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||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
5680260 |
aattactctagtagtcaaaataaaaagttttatctcaaaatttg-tttcgaaagttctttaaaaacacactttagttccaacttttctattgtttttttt |
5680358 |
T |
|
| Q |
215 |
nnnctcattggttccgacaccaacatcgattaaagttgtatttacaacgatgtcaatatattatatcaatttttgtgtgtctaaataatac |
305 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
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| T |
5680359 |
tttctcattggttccgacaccaacattgattaaagttgtatttacaacgacgtcaatatattatatcaatttttatatgtctaaataatac |
5680449 |
T |
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