View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16258_low_14 (Length: 351)
Name: NF16258_low_14
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 54405700 - 54406012
Alignment:
| Q |
11 |
aaaatatgaatactagataagtacttatttggtaacaccgactggacggctgaaactgaaaccatatgctataggttagttaataagttagtagtgatta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54405700 |
aaaatatgaatactagataagtacttatttggtaacaccgactggacggctgaaactgaaaccatatgctataggttagttaat-agttagtagtgatta |
54405798 |
T |
|
| Q |
111 |
tccaaagaaggccaatgtggggtccacatcctagatagtttgaaaatatttg-tgtttaggactgaggcacaagtacacatgatcctcaacaacaacaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54405799 |
tccaaagaaggccaatgtggggtccacatcctagatagtttgaaaatatttgttgtttaggactgaggcacaagtacacatgatcct------caacaac |
54405892 |
T |
|
| Q |
210 |
ccatgaaggcaacgtttctatattttgtgcagacgagggcaataccagaatacattattgcaagttatcgcatgcaataatgcatcttctgataccacct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54405893 |
ccatgaaggcaacgtttctatattttgtgcagacga-ggcaataccagaatacattattgcaagttatcgcatgc---aatgcatcttctgataccacct |
54405988 |
T |
|
| Q |
310 |
cacgggaatctgttatggaccata |
333 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
54405989 |
cacgggaatctgttatggaccata |
54406012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 54401060 - 54401185
Alignment:
| Q |
100 |
agtagtgattatccaaagaaggccaatgtgggg-tccacatcctagatagtttgaaaatatttg-tgtttaggactgaggcacaagtacacatgatcctc |
197 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||||| || | ||||||||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
54401060 |
agtagtgattatc-aaagaagaccaatgtgggggtccacattggag-tggtttgaaaatatttgctgtttaggaatga--cacaagtacacatgatcct- |
54401154 |
T |
|
| Q |
198 |
aacaacaacaacccatgaaggcaacgtttctatatt |
233 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
54401155 |
-----caacaacccatgaaggcaacgtttttatatt |
54401185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University