View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16258_low_15 (Length: 341)

Name: NF16258_low_15
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16258_low_15
NF16258_low_15
[»] chr3 (10 HSPs)
chr3 (17-285)||(21584439-21584706)
chr3 (17-135)||(24497250-24497368)
chr3 (17-138)||(25085111-25085232)
chr3 (17-135)||(24919877-24919995)
chr3 (25-135)||(31825548-31825658)
chr3 (17-138)||(24923448-24923569)
chr3 (25-138)||(24982127-24982240)
chr3 (216-275)||(31825354-31825414)
chr3 (210-275)||(24497094-24497160)
chr3 (211-259)||(32776641-32776690)
[»] chr7 (5 HSPs)
chr7 (28-145)||(10575471-10575588)
chr7 (21-90)||(354482-354551)
chr7 (17-110)||(39954861-39954954)
chr7 (213-285)||(10575614-10575687)
chr7 (57-90)||(10580895-10580928)
[»] chr8 (1 HSPs)
chr8 (28-144)||(14261014-14261130)
[»] chr2 (2 HSPs)
chr2 (17-125)||(41027645-41027753)
chr2 (61-122)||(30012130-30012191)
[»] chr5 (1 HSPs)
chr5 (70-122)||(26358552-26358604)
[»] chr4 (3 HSPs)
chr4 (17-125)||(22898626-22898734)
chr4 (17-125)||(22950294-22950402)
chr4 (17-133)||(53328787-53328903)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 21584706 - 21584439
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21584706 atgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 21584607  T
Q  117 ttatggattcggaggttgaagacgatgaattgcaacatgtgttgatgtgattcctctaaataatgcttaatttggttgttaattaggtttgttttgtttc 216  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  21584606 ttatggattcggaggttgaagaagatgaattgtaacatgtgttaatgtgaatcctctaaataatgcttaatttggttgttaattaggttt-tgttgtttc 21584508  T
Q  217 tttgtaagtttaacaagattgaaatctaatgaagtaatcttttatgttgaattatgattttactttgtg 285  Q
    ||||||||||||| | | ||||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  21584507 tttgtaagtttaaaatggttgaaatctaatgaaataatcttttatggtgaattatgattctactttgtg 21584439  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 24497368 - 24497250
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    ||||||| |||||||| ||||| ||| ||||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| ||    
T  24497368 atgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccct 24497269  T
Q  117 ttatggattcggaggttga 135  Q
     ||||| || |||||||||    
T  24497268 ctatggttttggaggttga 24497250  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 25085111 - 25085232
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    ||||||| |||||||| ||||| ||| ||||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||| ||    
T  25085111 atgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccct 25085210  T
Q  117 ttatggattcggaggttgaaga 138  Q
     ||||| || ||||||||||||    
T  25085211 ctatggttttggaggttgaaga 25085232  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 24919995 - 24919877
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    |||| ||||||||||| || || ||| ||||||| || ||||||||||| ||||| || |||||||| || ||||||||||||||||| |||||||| ||    
T  24919995 atgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccct 24919896  T
Q  117 ttatggattcggaggttga 135  Q
     ||||||||||||||||||    
T  24919895 ctatggattcggaggttga 24919877  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 31825658 - 31825548
Alignment:
Q  25 cgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggat 124  Q
    ||||||||||| || ||| ||||||| || ||||||||||| || || || ||||||||||| ||||||||||||||||| |||||||| || |||||||    
T  31825658 cgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggat 31825559  T
Q  125 tcggaggttga 135  Q
    |||||||||||    
T  31825558 tcggaggttga 31825548  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 24923569 - 24923448
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    |||| ||||||||||| || || ||| ||||||| || ||||||||||| ||||| || ||||||||||| |||||||||||||| || |||||||| ||    
T  24923569 atgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccct 24923470  T
Q  117 ttatggattcggaggttgaaga 138  Q
     |||||||| ||||||||||||    
T  24923469 ctatggatttggaggttgaaga 24923448  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 24982127 - 24982240
Alignment:
Q  25 cgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggat 124  Q
    |||||||| ||||| ||| ||||||| || |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| || ||||| |    
T  24982127 cgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtt 24982226  T
Q  125 tcggaggttgaaga 138  Q
    |||| |||||||||    
T  24982227 tcggtggttgaaga 24982240  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 31825414 - 31825354
Alignment:
Q  216 ctttgtaagttt-aacaagattgaaatctaatgaagtaatcttttatgttgaattatgatt 275  Q
    |||||||||||| |||||||||||||||||||||||| |   |||||| ||||||||||||    
T  31825414 ctttgtaagttttaacaagattgaaatctaatgaagtgactgtttatggtgaattatgatt 31825354  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 24497160 - 24497094
Alignment:
Q  210 ttgtttctttgtaagttt-aacaagattgaaatctaatgaagtaatcttttatgttgaattatgatt 275  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||  ||| || ||||||||||||    
T  24497160 ttgttcctttgtaagtttcaacaagatttgaatctaatgaagtaattatttctggtgaattatgatt 24497094  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 32776690 - 32776641
Alignment:
Q  211 tgtttctttgtaagttt-aacaagattgaaatctaatgaagtaatctttt 259  Q
    |||| |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  32776690 tgttcctttgtaagttttaacaagatttaaatcaaatgaagtaatctttt 32776641  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 10575471 - 10575588
Alignment:
Q  28 gatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcg 127  Q
    ||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||  | ||||| ||||||||||| || ||||| ||||    
T  10575471 gatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcg 10575570  T
Q  128 gaggttgaagacgatgaa 145  Q
    | ||||||||| ||||||    
T  10575571 gtggttgaagatgatgaa 10575588  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 354482 - 354551
Alignment:
Q  21 gattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttat 90  Q
    |||| ||||||| ||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  354482 gatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgtttat 354551  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 39954954 - 39954861
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag 110  Q
    |||||||||||||||| ||||| ||| |||||||||| |||||||| ||||| || || ||||||||||| |||||| | |||||||| |||||    
T  39954954 atgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 39954861  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 10575614 - 10575687
Alignment:
Q  213 tttctttgtaagttt-aacaagattgaaatctaatgaagtaatcttttatgttgaattatgattttactttgtg 285  Q
    ||||||||||||||| ||||||||||||||  |||||| |  |||||  || ||||||||||||||| ||||||    
T  10575614 tttctttgtaagttttaacaagattgaaattgaatgaaatgctctttcttggtgaattatgattttaatttgtg 10575687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 10580895 - 10580928
Alignment:
Q  57 gaggaagactgtgactgctatggatgttgtttat 90  Q
    |||||||||| |||||||||||||||||||||||    
T  10580895 gaggaagactctgactgctatggatgttgtttat 10580928  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 14261130 - 14261014
Alignment:
Q  28 gatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcg 127  Q
    ||||| ||||||||  |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| ||  | ||||| ||||    
T  14261130 gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcg 14261031  T
Q  128 gaggttgaagacgatga 144  Q
    ||||||||||| |||||    
T  14261030 gaggttgaagaagatga 14261014  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 41027645 - 41027753
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    |||| ||||||||||| ||||| ||| | ||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| || ||    
T  41027645 atgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaaggactct 41027744  T
Q  117 ttatggatt 125  Q
    |||||||||    
T  41027745 ttatggatt 41027753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 30012130 - 30012191
Alignment:
Q  61 aagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatgg 122  Q
    ||||| ||||||||||||||||| ||||||||  | |||||||||||||| || ||||||||    
T  30012130 aagacagtgactgctatggatgtggtttatgcgctcaagaggcaaggaaggaccctttatgg 30012191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 26358604 - 26358552
Alignment:
Q  70 actgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatgg 122  Q
    |||||||||||||||||||||||  | |||||||||||||| || ||||||||    
T  26358604 actgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatgg 26358552  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 22898626 - 22898734
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    |||||||| | ||||| || || ||| ||||||| || || |||||||| || |||||||||||||| ||||||||  | ||||| || |||||||| ||    
T  22898626 atgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22898725  T
Q  117 ttatggatt 125  Q
    ||| |||||    
T  22898726 ttacggatt 22898734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 22950294 - 22950402
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    |||||||| | ||||| || || ||| ||||||| || || |||||||| || |||||||||||||| ||||||||  | ||||| || |||||||| ||    
T  22950294 atgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22950393  T
Q  117 ttatggatt 125  Q
    ||| |||||    
T  22950394 ttacggatt 22950402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 53328787 - 53328903
Alignment:
Q  17 atgtgattcgtgatgcggttacgtactctgagcatgcgaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgct 116  Q
    |||||||||||||||| || || ||| | ||||||||  |  | |||||||| ||||| |||||||||||||| ||| | |||||||| ||||| || ||    
T  53328787 atgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactct 53328886  T
Q  117 ttatggattcggaggtt 133  Q
    ||| || ||||| ||||    
T  53328887 ttacggtttcgggggtt 53328903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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