View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16258_low_16 (Length: 339)

Name: NF16258_low_16
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16258_low_16
NF16258_low_16
[»] chr2 (1 HSPs)
chr2 (10-317)||(1231457-1231764)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 1231457 - 1231764
Alignment:
Q  10 aagaatatacaaggaagatagtagcaggaaagaaagcaagcagaaaacaaattgaatggaaagaaaaagactagaaatttaattgatttattagttggtt 109  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1231457 aagaaaatacaaggaagatagtagtaggaaagaaagcaagcagaaaacaaattgaatggaaagaaaaagactagaaatttaattgatttattagttggtt 1231556  T
Q  110 tggtatcaataagatatcgaaaggaaagaaaaataaaattgttctcttctcttgtttgatgtaggatgaaaagtaggaggtcaaaaacaatattagtaca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1231557 tggtatcaataagatatcgaaaggaaagaaaaataaaattgttctcttctcttgtttgatgtaggatgaaaagtaggaggtcaaaaacaacattagtaca 1231656  T
Q  210 acccacaatggatgcttattgaagagtgattatgaaaacttcacttctttgaggttctgagtttcttaaactgtgtatgagtataggggtgcaggattgt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  1231657 acccacaatggatgcttattgaagagtgattatgaaaacttcacttctttgaggttcttagtttcttaaattgtgtatgagtataggggtgcaggattgt 1231756  T
Q  310 gggtatgt 317  Q
    ||||||||    
T  1231757 gggtatgt 1231764  T

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