View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_low_17 (Length: 334)
Name: NF16258_low_17
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 54180529 - 54180211
Alignment:
| Q |
1 |
agtggagaagcataggaggacttctgtgagacaaacccgtccactgatgaatgcaaagtttttgaatagaggaaaatcattttctaacttgattattacc |
100 |
Q |
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| T |
54180529 |
agtggagatccattggaggacttctgtgagacaaacccgtctactgatgaatgcaaagtttttgaatagaggaaaatcattttctaacttgattattacc |
54180430 |
T |
|
| Q |
101 |
tctacaatcaagccatttgtttatttacgtatgatatcattcatatgagaaaaaagaacaaaatgttcagacatacaatgtgttttgtgatgtctgaggg |
200 |
Q |
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| T |
54180429 |
tctacaatcaagccatttgtttatttacgtatgatatcattcatatgagaaaaaagaacaaaatgttcagacatacaatgtgttttgtgatgtctgaggg |
54180330 |
T |
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| Q |
201 |
atttgataccaagttaaatttgtctatggtcaataatgagttttggtgtaacaacgattcataagtatcattatatatattgataataacaatgcagttc |
300 |
Q |
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| T |
54180329 |
a-ttgataccaagttaaatttgtctatggtcaataatgagttttggtgtaacaacgattcataagtatcattatatatattgataataacaatgcagttc |
54180231 |
T |
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| Q |
301 |
tgatatctgatatacgattt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
54180230 |
tgatatctgatatacgattt |
54180211 |
T |
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