View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_low_23 (Length: 254)
Name: NF16258_low_23
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 6495711 - 6495525
Alignment:
| Q |
8 |
caacacagacgacccagcagcgctgctgccccaccaatagcacacaacagctcccaaaaacagaaggccaacactggctgccacacacaacaggnnnnnn |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
6495711 |
caacccagacgacccagcagcgctgctgccccaccaatagcacacagaagctcccaaaaacagaaggccaacgctggctgccacaaacaacaggaaaaaa |
6495612 |
T |
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| Q |
108 |
nntagctcccaaaacaacagacagacaatcaaaagctatctcgcaaggcacgccaaagggttccaacaccattcgtagtaaaggcaaa |
195 |
Q |
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| T |
6495611 |
ac-agctcccaaaacaacagacagacaatcaaaagctatctcgcaaggcacgccaaagggttccaacaccattcgtagtaaaggcaaa |
6495525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 6495489 - 6495444
Alignment:
| Q |
191 |
gcaaaactttaatatcatccaccaactccatcacccccgtctcctt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6495489 |
gcaaaactttaatatcatccaccaactccatcacccccgtctcctt |
6495444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 30421695 - 30421749
Alignment:
| Q |
137 |
caaaagctatctcgcaaggcacgccaaagggttccaacaccattcgtagtaaagg |
191 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30421695 |
caaaagctatctcacaaggcacgccaaagggttccaacaccattcgtagaaaagg |
30421749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 30421792 - 30421836
Alignment:
| Q |
192 |
caaaactttaatatcatccaccaactccatcacccccgtctcctt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30421792 |
caaaactttaatatcatccaccaactccatcacccccgtctcctt |
30421836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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