View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_low_24 (Length: 250)
Name: NF16258_low_24
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 18103667 - 18103895
Alignment:
| Q |
1 |
atacactctagaatgggcaatggcagagttaatgcaaaatccagaaatcatgtcaaaagtacaaaaagaacttgaacaagttgttggaaaaggtattcca |
100 |
Q |
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| T |
18103667 |
atacacactagaatgggcaatggcagagttaatgcaaaatccagaaatcatgtcaaaagtacaaaaagaacttgaacaagttgttggcaaaggtattcca |
18103766 |
T |
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| Q |
101 |
atacaagaaacagacatagctaagttaccatacatgcaagcagttataaaagaaactcttcgtttacatccatcagttcccttattacttcctcgtaaag |
200 |
Q |
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| T |
18103767 |
atacaagaaacagacatagctaagttaccatacatgcaagcagttataaaagaaactcttcgtttacatccatcagttcccttattacttcctcgtaaag |
18103866 |
T |
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| Q |
201 |
cagaaacagatgttgaagttggtgactac |
229 |
Q |
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| T |
18103867 |
cagaaacagatgttgaagttggtgactac |
18103895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 18093659 - 18093883
Alignment:
| Q |
1 |
atacactctagaatgggcaatggcagagttaatgcaaaatccagaaatcatgtcaaaagtacaaaaagaacttgaacaagttgttggaaaaggtattcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
18093659 |
atacactctagaatgggcaatggcagagttaatgcacaatccagaaatcatgttaaaagtacaaaaggaacttgaacaagttgttggcaaaggtattcca |
18093758 |
T |
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| Q |
101 |
atacaagaaacagacatagctaagttaccatacatgcaagcagttataaaagaaactcttcgtttacatccatcagttcccttattacttcctcgtaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| | ||||| |||| |
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| T |
18093759 |
atacaagaaacagacatagctaagttaccatacatgcaagcagttataaaagaaacatttcgtttacatccaccagttcccttgttattacctcgcaaag |
18093858 |
T |
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| Q |
201 |
cagaaacagatgttgaagttggtga |
225 |
Q |
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| T |
18093859 |
cagaaatcgatgttgaaattggtga |
18093883 |
T |
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