View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_low_3 (Length: 443)
Name: NF16258_low_3
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 39076841 - 39076429
Alignment:
| Q |
15 |
atgaatagaaccgggtttatggttaattcgcctgcgtttcttggccaaggttcgactttttccgcccatagggggacccttcagtccagtttttcgccat |
114 |
Q |
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| T |
39076841 |
atgaatagaaccgggtttatggttaattcgcctgcgtttcttggccaaggttcgactttttccgcccatagggggacccttcagtccagtttttcgccat |
39076742 |
T |
|
| Q |
115 |
cacttcgtccttggaatgatattccaattgcggatgcctcggtggatcatcatagtcacaagtctcaacaacaaattcaccaagcttctatcttcggtag |
214 |
Q |
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| T |
39076741 |
cacttcgtccttggaatgatattccaattgcggatgcctcggtggatcatcataatcacaagtctcaacaacaaattcaccaagcttctatcttcggtag |
39076642 |
T |
|
| Q |
215 |
caggtttctgtctgatgctttgacaggtttctgtattcctgctagaattcaaggtgaggatgagagccatggagttggttccgaaaggccatcctcttct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076641 |
caggtttctgtctgatgctttgacaggtttctgtattcctgctagaattcaaggtgaggatgagagccatggagttggttccgaaaggccatcctcttct |
39076542 |
T |
|
| Q |
315 |
tctaattctcatcactaaccattagtatgaacttcacaatgctacaatcttccatttctatcaggtactccacaattgccannnnnnnctccttttcttg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39076541 |
tctaattctcatcactaaccattagtatgaacttcacaatgctacaatcttccatttctatcaggtactccacaattgccatttttttctccttttcttg |
39076442 |
T |
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| Q |
415 |
gattagtatttat |
427 |
Q |
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| T |
39076441 |
gattagtatttat |
39076429 |
T |
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