View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16258_low_6 (Length: 421)

Name: NF16258_low_6
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16258_low_6
NF16258_low_6
[»] scaffold0015 (1 HSPs)
scaffold0015 (194-342)||(26732-26880)
[»] chr8 (20 HSPs)
chr8 (194-342)||(89209-89357)
chr8 (55-154)||(17871980-17872077)
chr8 (55-118)||(28890668-28890731)
chr8 (56-120)||(24502380-24502444)
chr8 (57-120)||(7321030-7321093)
chr8 (55-136)||(24308531-24308613)
chr8 (55-116)||(26576969-26577030)
chr8 (55-119)||(12843510-12843574)
chr8 (55-121)||(1208377-1208444)
chr8 (55-121)||(19505162-19505229)
chr8 (55-121)||(23192294-23192361)
chr8 (55-94)||(24122162-24122201)
chr8 (55-136)||(18527761-18527843)
chr8 (55-120)||(12863782-12863847)
chr8 (55-119)||(22461316-22461383)
chr8 (55-119)||(26833448-26833515)
chr8 (94-154)||(34061952-34062013)
chr8 (56-154)||(19342153-19342253)
chr8 (56-154)||(19371651-19371751)
chr8 (58-118)||(25809562-25809622)
[»] chr7 (21 HSPs)
chr7 (194-342)||(11714063-11714211)
chr7 (194-342)||(11709700-11709848)
chr7 (55-118)||(8106030-8106093)
chr7 (57-117)||(4031203-4031263)
chr7 (60-136)||(7185260-7185336)
chr7 (55-118)||(1775270-1775333)
chr7 (59-136)||(26822674-26822753)
chr7 (59-121)||(5740806-5740868)
chr7 (60-136)||(12341682-12341759)
chr7 (57-118)||(27706974-27707035)
chr7 (67-119)||(17891052-17891104)
chr7 (59-110)||(19143950-19144001)
chr7 (59-110)||(20743349-20743400)
chr7 (55-132)||(24865779-24865857)
chr7 (55-131)||(1877948-1878025)
chr7 (56-120)||(2265225-2265292)
chr7 (55-119)||(9763044-9763109)
chr7 (57-136)||(15756910-15756991)
chr7 (55-119)||(19417581-19417646)
chr7 (57-155)||(1675002-1675102)
chr7 (370-402)||(21142164-21142196)
[»] chr3 (28 HSPs)
chr3 (194-340)||(5380552-5380698)
chr3 (55-136)||(4767336-4767418)
chr3 (194-342)||(13720317-13720465)
chr3 (55-136)||(14426885-14426967)
chr3 (57-119)||(20311360-20311422)
chr3 (55-120)||(9796546-9796611)
chr3 (56-138)||(5797905-5797989)
chr3 (55-135)||(16198648-16198729)
chr3 (57-137)||(17034119-17034200)
chr3 (57-120)||(4508348-4508412)
chr3 (188-352)||(42967544-42967707)
chr3 (55-109)||(13291367-13291421)
chr3 (57-121)||(19705773-19705838)
chr3 (57-137)||(38076004-38076085)
chr3 (57-117)||(11045001-11045061)
chr3 (55-110)||(17119403-17119458)
chr3 (55-121)||(21317699-21317766)
chr3 (62-137)||(23953613-23953688)
chr3 (74-120)||(9828967-9829013)
chr3 (65-119)||(14328691-14328745)
chr3 (59-120)||(2906510-2906571)
chr3 (55-120)||(4515051-4515116)
chr3 (55-119)||(8728711-8728777)
chr3 (55-119)||(9080598-9080664)
chr3 (62-138)||(17637146-17637223)
chr3 (55-119)||(19249100-19249167)
chr3 (62-118)||(8108800-8108856)
chr3 (55-119)||(30212508-30212572)
[»] chr6 (16 HSPs)
chr6 (194-327)||(32705712-32705845)
chr6 (194-342)||(16774977-16775125)
chr6 (55-109)||(22562392-22562446)
chr6 (62-120)||(30701118-30701176)
chr6 (55-135)||(18614922-18615002)
chr6 (55-121)||(26186078-26186145)
chr6 (55-119)||(29032378-29032442)
chr6 (55-118)||(7775131-7775193)
chr6 (55-121)||(24399051-24399118)
chr6 (59-136)||(10814396-10814474)
chr6 (56-118)||(10821476-10821538)
chr6 (59-117)||(17291901-17291959)
chr6 (63-109)||(21747435-21747481)
chr6 (57-136)||(1559384-1559465)
chr6 (55-119)||(12394845-12394910)
chr6 (70-119)||(26239004-26239053)
[»] chr1 (15 HSPs)
chr1 (190-352)||(2793029-2793191)
chr1 (194-327)||(14474095-14474228)
chr1 (62-154)||(1615986-1616079)
chr1 (57-117)||(2973421-2973481)
chr1 (57-136)||(12398141-12398221)
chr1 (63-117)||(11105639-11105693)
chr1 (55-117)||(14580346-14580408)
chr1 (55-117)||(33439302-33439364)
chr1 (55-136)||(10751527-10751612)
chr1 (55-131)||(21617050-21617127)
chr1 (55-138)||(31584007-31584091)
chr1 (60-154)||(27983302-27983397)
chr1 (55-155)||(1634895-1634997)
chr1 (55-120)||(41029690-41029755)
chr1 (55-138)||(17103026-17103110)
[»] chr4 (18 HSPs)
chr4 (194-342)||(14024495-14024643)
chr4 (60-136)||(11420106-11420183)
chr4 (57-136)||(8677211-8677291)
chr4 (57-154)||(11700986-11701084)
chr4 (67-136)||(20896769-20896839)
chr4 (60-117)||(47576018-47576075)
chr4 (55-136)||(17473736-17473819)
chr4 (62-136)||(20245745-20245820)
chr4 (67-155)||(5716870-5716960)
chr4 (56-118)||(16321853-16321914)
chr4 (58-119)||(19053593-19053654)
chr4 (55-120)||(19818897-19818963)
chr4 (59-117)||(21809636-21809694)
chr4 (59-117)||(27941225-27941283)
chr4 (94-158)||(10220885-10220950)
chr4 (57-121)||(13306686-13306751)
chr4 (59-135)||(22222325-22222402)
chr4 (55-119)||(11449107-11449171)
[»] chr2 (20 HSPs)
chr2 (55-135)||(27765297-27765378)
chr2 (62-154)||(35511820-35511914)
chr2 (59-138)||(26712927-26713006)
chr2 (55-135)||(22311200-22311281)
chr2 (59-116)||(23959751-23959808)
chr2 (58-156)||(18038712-18038812)
chr2 (55-118)||(20586959-20587022)
chr2 (65-120)||(42256584-42256639)
chr2 (59-154)||(19915749-19915845)
chr2 (60-119)||(18848739-18848798)
chr2 (55-117)||(16586595-16586657)
chr2 (71-136)||(19877711-19877777)
chr2 (55-117)||(25348469-25348530)
chr2 (55-119)||(19115524-19115591)
chr2 (55-121)||(24844471-24844539)
chr2 (55-119)||(25189747-25189814)
chr2 (55-120)||(27483816-27483881)
chr2 (55-118)||(24158221-24158285)
chr2 (56-119)||(24302585-24302651)
chr2 (57-117)||(24764139-24764199)
[»] chr5 (11 HSPs)
chr5 (57-119)||(16182670-16182732)
chr5 (63-135)||(26014153-26014226)
chr5 (57-117)||(24884889-24884948)
chr5 (59-136)||(24492067-24492145)
chr5 (64-120)||(26335228-26335284)
chr5 (59-119)||(2152613-2152675)
chr5 (57-120)||(18821100-18821163)
chr5 (55-119)||(9089309-9089376)
chr5 (57-121)||(20237109-20237174)
chr5 (56-132)||(9824663-9824738)
chr5 (57-117)||(24837993-24838053)
[»] scaffold0003 (1 HSPs)
scaffold0003 (55-155)||(319030-319131)
[»] scaffold0804 (1 HSPs)
scaffold0804 (55-117)||(63-125)
[»] scaffold0329 (1 HSPs)
scaffold0329 (55-154)||(4677-4777)
[»] scaffold0161 (1 HSPs)
scaffold0161 (56-135)||(5466-5545)
[»] scaffold0758 (1 HSPs)
scaffold0758 (55-121)||(4644-4711)
[»] scaffold0074 (1 HSPs)
scaffold0074 (55-121)||(32015-32082)
[»] scaffold0217 (1 HSPs)
scaffold0217 (57-138)||(6561-6643)
[»] scaffold0022 (1 HSPs)
scaffold0022 (55-119)||(159472-159539)
[»] scaffold0395 (1 HSPs)
scaffold0395 (60-119)||(13178-13240)
[»] scaffold0351 (1 HSPs)
scaffold0351 (55-118)||(8948-9012)
[»] scaffold0002 (1 HSPs)
scaffold0002 (55-118)||(112580-112644)


Alignment Details
Target: scaffold0015 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 342
Target Start/End: Complemental strand, 26880 - 26732
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| ||||||| |||| |||||||||||||||| | || || |||||| |||||||| ||||||||||||||||||    
T  26880 tggagaatgtgtgttgatagtcgagctgtcaacaagattaccatcaagtatcgatttccgatacctagacttgatgatttattagatcagttgcatggtg 26781  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatcag 342  Q
    | ||| ||||| |||||||||||| ||| |||||| | | ||||||||||    
T  26780 ccaccatcttt-tcaaagattgatcttcgaagtggataccatcaaatcag 26732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 89209 - 89357
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| ||||||| |||| |||||||||||||||| | || || |||||| |||||||| ||||||||||||||||||    
T  89209 tggagaatgtgtgttgatagtcgagctgtcaacaagattaccatcaagtatcgatttccgatacctagacttgatgatttattagatcagttgcatggtg 89308  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatcag 342  Q
    | ||| ||||| |||||||||||| ||| |||||| | | ||||||||||    
T  89309 ccaccatcttt-tcaaagattgatcttcgaagtggataccatcaaatcag 89357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 17872077 - 17871980
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaacttagaagcattgtacaaaactcactttgattcaaca 154  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||| |||||||| |||||||||||  ||||||||||||||||| |||  |||||||    
T  17872077 cctgcatacttgaacacaaattagcatatcaaattgttcttttatacattgttatcatcaaaacttag--gcattgtacaaaactcattttagttcaaca 17871980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 28890668 - 28890731
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    ||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  28890668 cctgcacacttaaatatatattagcatatccaattattctttaatactttgttatcatcaaaac 28890731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 24502444 - 24502380
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||| ||||||| ||||||||||||||| |||| |||||| ||||||| ||||| |||||||||    
T  24502444 ctgcatacttgaatatatattagcatatccaattgttctttaatactttattatcatcaaaactt 24502380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 7321093 - 7321030
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||||| ||||||||||||||||| ||||  |||||  ||||||||||||| |||||||||    
T  7321093 tgcacacttaaacatatattagcatataaaatagttcttcaatactttgttatcatcaaaactt 7321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 24308613 - 24308531
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    ||||| ||||||||||||||||  |||||| |||| || ||| ||||||||||||| |||||| |||||| | ||||||||||    
T  24308613 cctgcgcacttgaacatatattcacatatccaatttttatttaatactttgttatcatcaaaaccttagaggaattgtacaaa 24308531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 26576969 - 26577030
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaa 116  Q
    |||||||||||||| |||||||||||||| ||||| |||||| ||| ||| ||||| |||||    
T  26576969 cctgcacacttgaatatatattagcatattaaattgttctttgatattttattatcatcaaa 26577030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 12843510 - 12843574
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| | |||||| |||| ||||||||||| |||| || ||||| ||||||||    
T  12843510 cctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaact 12843574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 1208444 - 1208377
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattc-ttttatactttgttatcttcaaaactta 121  Q
    |||||||||||||||| ||||||||||||| ||| | || ||| |||| |||||||| ||||||||||    
T  1208444 cctgcacacttgaacaaatattagcatatctaatcaatcatttaataccttgttatcatcaaaactta 1208377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 19505229 - 19505162
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaactta 121  Q
    |||||||||||||||| |||||| |||||||||||   ||||| |||| |||||||| ||||||||||    
T  19505229 cctgcacacttgaacaaatattaacatatcaaattgaacttttaataccttgttatcatcaaaactta 19505162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 23192361 - 23192294
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaactta 121  Q
    |||||||||||||||| ||||||||||||| |||| | | ||| |||| |||||||| ||||||||||    
T  23192361 cctgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaactta 23192294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 24122162 - 24122201
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattct 94  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  24122162 cctgcacacttgaacacatattagcatatccaattattct 24122201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 18527843 - 18527761
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    ||||||||||| ||||||| |||||||||| |||| |||||| |||  |||||||  ||||||| ||||| | ||||||||||    
T  18527843 cctgcacacttaaacatattttagcatatctaattgttctttaatatcttgttataatcaaaactttagaggtattgtacaaa 18527761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 12863782 - 12863847
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||||||| |||| |||||| |||||| |||| || ||  ||||||||||||| |||||||||    
T  12863782 cctgcacacttaaacacatattaacatatccaattgttgttcaatactttgttatcatcaaaactt 12863847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 22461383 - 22461316
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   | | ||| ||||||||||||| ||||||||    
T  22461383 cctgcacacttgaacaaatattagcatatccaattgacaatttttaatactttgttatcatcaaaact 22461316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 26833448 - 26833515
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   | | ||| ||||||||||||| ||||||||    
T  26833448 cctgcacacttgaacaaatattagcatatccaattgacaatttttaatactttgttatcatcaaaact 26833515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 34062013 - 34061952
Alignment:
Q  94 ttttatactttgttatcttcaaaa-cttagaagcattgtacaaaactcactttgattcaaca 154  Q
    ||||||||||||||||| |||||| |||||| |||||||| |||||||| |||  |||||||    
T  34062013 ttttatactttgttatcatcaaaaccttagaggcattgtataaaactcattttagttcaaca 34061952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 19342253 - 19342153
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtac-aaaactcactttgattcaac 153  Q
    ||||||||||||||| | ||| |  |||| |||| |||||| |||| |||||||| ||||||| |||||  |||||| | ||||||||||||| ||||||    
T  19342253 ctgcacacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggttcaac 19342154  T
Q  154 a 154  Q
    |    
T  19342153 a 19342153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 19371751 - 19371651
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtac-aaaactcactttgattcaac 153  Q
    ||||||||||||||| | ||| |  |||| |||| |||||| |||| |||||||| ||||||| |||||  |||||| | ||||||||||||| ||||||    
T  19371751 ctgcacacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggttcaac 19371652  T
Q  154 a 154  Q
    |    
T  19371651 a 19371651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 25809562 - 25809622
Alignment:
Q  58 gcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    ||||||| ||||| | |||||  |||| ||||||||||||||||||||||| | |||||||    
T  25809562 gcacactcgaacacacattagagtatccaattattcttttatactttgttaacatcaaaac 25809622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 11714063 - 11714211
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| ||||||| |||| |||||||||||||||| | || || |||||| |||||||| ||||||||||||||||||    
T  11714063 tggagaatgtgtgttgatagtcgagctgtcaacaagattaccatcaagtatcgatttccgatacctagacttgatgatttattagatcagttgcatggtg 11714162  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatcag 342  Q
    | ||| ||||| |||||||||||| ||| |||||| | | ||||||||||    
T  11714163 ccaccatcttt-tcaaagattgatcttcgaagtggataccatcaaatcag 11714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 11709700 - 11709848
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||| | ||||||| ||||  ||||| ||||||||| | || || |||||| |||||||| ||||||||||||||||||    
T  11709700 tggagaatgtgtgttgatagtcgagttgtcaacaagattacaatcaaatatcgatttccgatacctagacttgatgatttattagatcagttgcatggtg 11709799  T
Q  294 ctacctctttctcaaagattgatattcaaagtgggttctatcaaatcag 342  Q
    | |||   || | |||||||||| ||| |||||| | | ||||||||||    
T  11709800 ccaccatattttaaaagattgatcttcgaagtggataccatcaaatcag 11709848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 8106030 - 8106093
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    ||||||||||  || ||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  8106030 cctgcacactataagatatattagcatatctaattattctttaatactttgttatcatcaaaac 8106093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 4031263 - 4031203
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||||||||||||||| || ||| ||||||||||| ||||||| ||||| ||||||    
T  4031263 tgcacacttgaacatatattaacacatctaattattctttaatactttattatcatcaaaa 4031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 7185336 - 7185260
Alignment:
Q  60 acacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaacttagaagcattgtacaaa 136  Q
    ||||||||||| ||||||||||||| |||| | |||  ||||||||||||| ||||| |||||| | ||||||||||    
T  7185336 acacttgaacaaatattagcatatccaattgtccttcaatactttgttatcatcaaaccttagatgaattgtacaaa 7185260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 1775333 - 1775270
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    |||||||||||||||||| ||||||||||| ||||||| ||  ||| ||||||||| |||||||    
T  1775333 cctgcacacttgaacatagattagcatatccaattattattcaataatttgttatcatcaaaac 1775270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 26822674 - 26822753
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    ||||||| |||||||||||||||||| |||| ||||||| ||||||||||||  |||||| |||||| | ||||||||||    
T  26822674 cacacttaaacatatattagcatatccaattgttcttttaatactttgttattatcaaaaccttagatgaattgtacaaa 26822753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 5740806 - 5740868
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactta 121  Q
    |||| ||||||| | ||||||||||| |||| |||||||||||||||| ||| ||||||||||    
T  5740806 cacatttgaacacacattagcatatccaattgttcttttatactttgtaatcatcaaaactta 5740868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 12341682 - 12341759
Alignment:
Q  60 acacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    |||||| ||||||||||| |||||  |||| |||||| ||||||||||||| ||||||  ||||| ||||||||||||    
T  12341682 acacttaaacatatattaacatattcaatttttctttaatactttgttatcatcaaaattttagaggcattgtacaaa 12341759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 27707035 - 27706974
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    ||||| |||||||||  ||||||||||| ||||||||||| ||||||||||| | |||||||    
T  27707035 tgcacgcttgaacattaattagcatatctaattattctttaatactttgttaccatcaaaac 27706974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 17891104 - 17891052
Alignment:
Q  67 aacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||||| |||| |||||| ||| ||||||||| ||||||||    
T  17891104 aacatatattagcatatctaattgttctttaatattttgttatcatcaaaact 17891052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 19143950 - 19144001
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatc 110  Q
    |||| ||||||||||||||||||||| |||| || ||| |||||||||||||    
T  19143950 cacaattgaacatatattagcatatccaattgttatttaatactttgttatc 19144001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 20743349 - 20743400
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatc 110  Q
    |||| ||||||||||||||||||||| |||| || ||| |||||||||||||    
T  20743349 cacaattgaacatatattagcatatccaattgttatttaatactttgttatc 20743400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 24865779 - 24865857
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgta 132  Q
    |||||| |||||| ||||||| | |||||| |||| || || |||||||||||||| ||||||| ||||| ||||||||    
T  24865779 cctgcatacttgaccatatatcaacatatccaattgtttttatatactttgttatcatcaaaactttagaggcattgta 24865857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 1878025 - 1877948
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaacttagaagcattgt 131  Q
    |||||||||||||||| ||||||||||||| ||||   ||||| |||| | |||||| |||||||||| | |||||||    
T  1878025 cctgcacacttgaacaaatattagcatatccaattgaacttttaatacctagttatcatcaaaacttaaaggcattgt 1877948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 2265292 - 2265225
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaactt 120  Q
    ||||||||||||||| ||||||||||||| ||||   | | ||| ||||||||||||| |||||||||    
T  2265292 ctgcacacttgaacaaatattagcatatccaattgacaatttttaatactttgttatcatcaaaactt 2265225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 9763044 - 9763109
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   ||||| |||| |||||||| ||||||||    
T  9763044 cctgcacacttgaacagatattagcatatccaattgaacttttaataccttgttatcatcaaaact 9763109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 15756991 - 15756910
Alignment:
Q  57 tgcacacttgaacatatattagcata-tcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    |||||||||||| ||||||||||||| ||||||| |||||| || | || ||||| ||||||| ||||| | ||||||||||    
T  15756991 tgcacacttgaatatatattagcatattcaaattgttctttaatgcattattatcatcaaaactttagatgtattgtacaaa 15756910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 19417581 - 19417646
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttta-tactttgttatcttcaaaact 119  Q
    |||||||||||||| | ||||||||||||| ||||| ||||||| ||  |||||||| ||||||||    
T  19417581 cctgcacacttgaataaatattagcatatccaattaatcttttattatcttgttatcatcaaaact 19417646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 1675102 - 1675002
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtac-aaaactcactttgattcaaca 154  Q
    |||||||||||||| | | ||| ||||| |||| ||||| ||||| || ||||| |||||| ||||| |||||| | | ||||||||||||| |||||||    
T  1675102 tgcacacttgaacaaacaatagaatatccaattgttcttctatacattattatcatcaaaatcttagtagcattattctaaaactcactttggttcaaca 1675003  T
Q  155 t 155  Q
    |    
T  1675002 t 1675002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 21142164 - 21142196
Alignment:
Q  370 ttgtgcttatcaaatttgtcttgtcatcacttt 402  Q
    |||||||||| ||||||||||||||||||||||    
T  21142164 ttgtgcttattaaatttgtcttgtcatcacttt 21142196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 340
Target Start/End: Complemental strand, 5380698 - 5380552
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| ||||||| |||| |||||||||||||||||  || || |||||| |||||||| ||||||||||||||||||    
T  5380698 tggagaatgtgtgttgatagtcgagctgtcaacaagattaccatcaagtatcgatttttgatacctagacttgatgatttattagatcagttgcatggtg 5380599  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatc 340  Q
    | ||| ||||| |||||||||||| ||| |||||| | | ||||||||    
T  5380598 ccaccatcttt-tcaaagattgatcttcgaagtggataccatcaaatc 5380552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 4767418 - 4767336
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||| | ||||||||||    
T  4767418 cctgcacacttgaacatatattagcatatctaattattctttaatactttgttatcatcaaaaccttagaggaattgtacaaa 4767336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 194 - 342
Target Start/End: Complemental strand, 13720465 - 13720317
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| ||||||| |||| |||||||||||||||| | || |  |||||| |||||||| ||||||||||||||||||    
T  13720465 tggagaatgtgtgttgatagtcgagctgtcaacaagattaccatcaagtatcgatttccgatacttagacttgatgatttattagatcagttgcatggtg 13720366  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatcag 342  Q
    | ||| ||||| ||||||||| || ||| |||||| | | ||||||||||    
T  13720365 ccaccatcttt-tcaaagattcatcttcgaagtggataccatcaaatcag 13720317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 14426967 - 14426885
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||| |||||| | ||||||||||    
T  14426967 cctgcacacttgaacatatattagcatatccaattgttctttaatactttgttatcatcaaaatcttagaggaattgtacaaa 14426885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 20311422 - 20311360
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||||||||||||||| |||| |||||  ||||||||||||| ||||||||    
T  20311422 tgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatcatcaaaact 20311360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 9796546 - 9796611
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||||||||||||||||||| |||||| |||| |||||| ||||||| ||||| |||||||||    
T  9796546 cctgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaactt 9796611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 5797989 - 5797905
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattctttta-tactttgttatcttcaaaacttagaa-gcattgtacaaaac 138  Q
    ||||||||||||||||| |||| |||||| |||| |||||||| ||| |||||||| ||||||||||||| | ||||||||||||    
T  5797989 ctgcacacttgaacatacattaacatatccaattgttcttttagtaccttgttatcatcaaaacttagaaggaattgtacaaaac 5797905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 16198729 - 16198648
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaa 135  Q
    |||||||||||||||| ||||||| ||||| ||||||||||  |||||||||||||  ||||| |||||| | |||||||||    
T  16198729 cctgcacacttgaacaaatattagtatatccaattattcttcaatactttgttatcaacaaaaccttagatgaattgtacaa 16198648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 17034200 - 17034119
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt-agaagcattgtacaaaa 137  Q
    ||||||||||||||| ||||| |||||| |||| |||||  |||| |||||||| ||||||||| ||| |||||||||||||    
T  17034200 tgcacacttgaacatgtattaacatatccaattgttcttcaatacattgttatcatcaaaacttcagaggcattgtacaaaa 17034119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 4508348 - 4508412
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaactt 120  Q
    |||||||||||||||||||||||||||| | || ||||||| |||| |||||||| |||||||||    
T  4508348 tgcacacttgaacatatattagcatatctagttcttcttttaataccttgttatcatcaaaactt 4508412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 352
Target Start/End: Complemental strand, 42967707 - 42967544
Alignment:
Q  188 aaaagttggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgc 287  Q
    ||||||||||||||| |||||||||   ||| | |||| |||||||| ||||||| | | |||  ||| |||  |||| ||||||| |||||  |||| |    
T  42967707 aaaagttggagaatgtgtgttgatagacgagtt-tcaaaaaaattattatcaagttttgttttctaataccccaacttgatgatttgctagaatagttac 42967609  T
Q  288 atggtgctacctctttctcaaagattgatattcaaagtgggttctatcaaatcagattgaggcca 352  Q
    ||||||||||| |||||||||||| |||  |||  | ||||| | ||||||| ||||||||||||    
T  42967608 atggtgctaccactttctcaaagactgaccttcttaatgggtaccatcaaattagattgaggcca 42967544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 13291421 - 13291367
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttat 109  Q
    ||||||||||||||||||||||| |||||| |||| |||||  ||||||||||||    
T  13291421 cctgcacacttgaacatatattaacatatctaattgttcttcaatactttgttat 13291367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 19705773 - 19705838
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaactta 121  Q
    |||||||||||||| ||||||||||||| ||||   ||||| ||||||||||||| ||||||||||    
T  19705773 tgcacacttgaacaaatattagcatatccaattgaacttttaatactttgttatcatcaaaactta 19705838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 38076085 - 38076004
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaaa 137  Q
    ||||||||||| |||||||||| ||||| |||| |||||  |||||||||| || |||||| |||||| | |||||||||||    
T  38076085 tgcacacttgagcatatattagtatatctaattgttcttcaatactttgttgtcatcaaaatcttagaggaattgtacaaaa 38076004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 11045001 - 11045061
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||| ||||||||||||||||||  ||| |||||  ||||||||||||| ||||||    
T  11045001 tgcacacttaaacatatattagcatatctcattgttcttcaatactttgttatcatcaaaa 11045061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 17119403 - 17119458
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatc 110  Q
    ||||||||||| ||||||||||| |||| |||||  |||||| |||||||||||||    
T  17119403 cctgcacacttaaacatatattaacataccaaatagttctttaatactttgttatc 17119458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 21317699 - 21317766
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaactta 121  Q
    |||||| ||||||||| ||||||||||||| |||| | ||||| |||| |||||||| ||||||||||    
T  21317699 cctgcatacttgaacaaatattagcatatccaattgactctttaataccttgttatcatcaaaactta 21317766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 23953688 - 23953613
Alignment:
Q  62 acttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaacttagaagcattgtacaaaa 137  Q
    ||||||||| ||||| |||| || |||| |||||| ||||||||||||| ||||||||| || |  ||||||||||    
T  23953688 acttgaacaaatattggcatttccaattgttctttaatactttgttatcatcaaaactttgaggatttgtacaaaa 23953613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 9829013 - 9828967
Alignment:
Q  74 attagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||||||| |||| ||||||||||| |||||||| |||||||||    
T  9829013 attagcatatctaattgttcttttatacattgttatcatcaaaactt 9828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 14328691 - 14328745
Alignment:
Q  65 tgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||||||| || | |||||  ||||||||||||| ||||||||    
T  14328691 tgaacatatattagcatatccaactgttcttcaatactttgttatcatcaaaact 14328745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 2906510 - 2906571
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    |||||||||||| || ||||  |||| |||||||||| ||||| |||||||| |||||||||    
T  2906510 cacacttgaacaaattttagagtatccaattattcttctatacattgttatcatcaaaactt 2906571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 4515051 - 4515116
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||||||||||||||||||| |||||| | || || ||  ||||||||||||| |||| ||||    
T  4515051 cctgcacacttgaacatatattaacatatccagttgtttttcaatactttgttatcatcaatactt 4515116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 8728777 - 8728711
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   ||| |||||||| |||||||| ||||||||    
T  8728777 cctgcacacttgaacaaatattagcatatctaattgacatt-ttttataccttgttatcctcaaaact 8728711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 9080664 - 9080598
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   ||| |||||||| |||||||| ||||||||    
T  9080664 cctgcacacttgaacaaatattagcatatctaattgacatt-ttttataccttgttatcctcaaaact 9080598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 17637223 - 17637146
Alignment:
Q  62 acttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaaac 138  Q
    |||||||||||||| |||||||| |||| ||||||  || ||||||||| |||||||  |||| | ||||||||||||    
T  17637223 acttgaacatatatcagcatatccaattgttctttactaatttgttatcatcaaaacactagaggaattgtacaaaac 17637146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 19249167 - 19249100
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   | | ||| ||||||||||||| ||||||||    
T  19249167 cctgcacacttgaacaaatattagcatatccaattgacaatttttaatactttgttatcatcaaaact 19249100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 8108856 - 8108800
Alignment:
Q  62 acttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    ||||||||| | ||||||||||   ||| |||||||||||||||||||| |||||||    
T  8108856 acttgaacacacattagcatattccattgttcttttatactttgttatcatcaaaac 8108800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 30212508 - 30212572
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    |||||| |||||||||||||||| |||||  |||| ||| || ||||||| ||||| ||||||||    
T  30212508 cctgcatacttgaacatatattaacatatataattgttcgttaatactttattatcatcaaaact 30212572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 32705712 - 32705845
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| ||||||| |||| |||||||||||||||| | || || |||||| |||||||| ||||||||||||||||||    
T  32705712 tggagaatgcgtgttgatagtcgagctgtcaacaagattaccatcaagtatcgatttccgatacctagacttgatgatttattagatcagttgcatggtg 32705811  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgg 327  Q
    | ||| ||||| |||||||||||| ||| ||||||    
T  32705812 ccaccatcttt-tcaaagattgatcttcgaagtgg 32705845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 342
Target Start/End: Complemental strand, 16775125 - 16774977
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| |  |||| ||||||| |||| |||||||||||||||  | || || |||||| |||||||| | ||||||||||||||||    
T  16775125 tggagaatgtgtgttgatagtaaagctgtcaacaagattaccatcaagtatcgattcccgatacctagacttgatgatttattggatcagttgcatggtg 16775026  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatcag 342  Q
    | ||| ||||| |||||||||||| ||| ||| || | | ||||||||||    
T  16775025 ccaccatcttt-tcaaagattgatcttcgaagcggataccatcaaatcag 16774977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 22562446 - 22562392
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttat 109  Q
    |||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||    
T  22562446 cctgcacacttgaacatatattcgcatatccaatttttctttaatactttgttat 22562392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 30701176 - 30701118
Alignment:
Q  62 acttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||| | ||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  30701176 acttgaatacatattagcatatccaattgttcttttatactttgttatcatcaaaactt 30701118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 18615002 - 18614922
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaacttagaagcattgtacaa 135  Q
    |||||||||||||||| ||||||| |||| | ||| |||||  ||||||||||||| ||||||| |||| | |||||||||    
T  18615002 cctgcacacttgaacaaatattagtatattacattgttcttcaatactttgttatcatcaaaacctagaggaattgtacaa 18614922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 26186078 - 26186145
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaactta 121  Q
    |||||||||||||||| ||||||||||||| |||| | ||||| |||| |||||||| ||||||||||    
T  26186078 cctgcacacttgaacaaatattagcatatccaattgactctttcataccttgttatcatcaaaactta 26186145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 29032378 - 29032442
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    ||||||| || ||| ||||||||||||||  |||| |||||| ||||||||||||| ||||||||    
T  29032378 cctgcactctagaatatatattagcatattcaattgttctttaatactttgttatcatcaaaact 29032442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 7775193 - 7775131
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    |||| ||||||||||||||||||| || |||| ||||||||  ||||||||||||| |||||||    
T  7775193 cctgtacacttgaacatatattagtatttcaa-ttattcttcaatactttgttatcatcaaaac 7775131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 24399051 - 24399118
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaactta 121  Q
    |||||||||||||||| ||||||||||||| |||| | | ||| |||| |||||||| ||||||||||    
T  24399051 cctgcacacttgaacaaatattagcatatccaattcactttttaataccttgttatcatcaaaactta 24399118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 10814474 - 10814396
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    ||||||| ||| |||||||||||||| |||| |||||| || |||||||| | |||||| |||||| | ||||||||||    
T  10814474 cacacttaaacgtatattagcatatccaattgttctttaattctttgttaccatcaaaaccttagaggaattgtacaaa 10814396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 10821476 - 10821538
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    ||||||||||||||| ||||||  ||||| |||| |||||  ||||||||||||| |||||||    
T  10821476 ctgcacacttgaacacatattaatatatctaattgttcttcaatactttgttatcatcaaaac 10821538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 17291901 - 17291959
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||| |||||||||||||||||  ||||||||||| | | ||||||||| ||||||    
T  17291901 cacacttaaacatatattagcatattcaattattctttaagattttgttatcatcaaaa 17291959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 21747435 - 21747481
Alignment:
Q  63 cttgaacatatattagcatatcaaattattcttttatactttgttat 109  Q
    ||||| |||||||||||||||| |||| |||||| ||||||||||||    
T  21747435 cttgatcatatattagcatatccaatttttctttaatactttgttat 21747481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 1559384 - 1559465
Alignment:
Q  57 tgcacacttgaacatatattagcata-tcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    |||||||||||| ||||||||||||| ||||||| |||||| || | || ||||| ||||||| ||||| | ||||||||||    
T  1559384 tgcacacttgaatatatattagcatattcaaattgttctttaatgcattattatcatcaaaactttagatgtattgtacaaa 1559465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 12394845 - 12394910
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| |||||| |||||| |||| ||  ||| ||||||||||||| ||||||||    
T  12394845 cctgcacacttgaacaaatattaacatatctaattgatcatttaatactttgttatcatcaaaact 12394910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 26239004 - 26239053
Alignment:
Q  70 atatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    ||||||||||||||| |||| |||||  ||||||||||||| ||||||||    
T  26239004 atatattagcatatccaattgttcttcaatactttgttatcatcaaaact 26239053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 352
Target Start/End: Complemental strand, 2793191 - 2793029
Alignment:
Q  190 aagttggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcat 289  Q
    ||||||||||||| || |||||| | ||| | ||||||| |||| |||||||||||||||| | || || |||||| |||||||| ||||||||||| ||    
T  2793191 aagttggagaatgtgtattgatagtcgagttgtcaacaagattaccatcaagtatcgatttccgatacctagacttgatgatttattagatcagttgtat 2793092  T
Q  290 ggtgctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatcagattgaggcca 352  Q
    ||||| ||| ||||| |||||||||||| ||| |||||| | | ||||||||||| | ||||||    
T  2793091 ggtgccaccatcttt-tcaaagattgatcttcgaagtggataccatcaaatcagacttaggcca 2793029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 14474228 - 14474095
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| ||||||| |||| |||||||| ||||||| | || || |||||| |||||||| ||||||||||||||||||    
T  14474228 tggagaatgtgtgttgatagtcgagctgtcaacaagattaccatcaagtgtcgatttccgatacctagacttgatgatttattagatcagttgcatggtg 14474129  T
Q  294 -ctacctctttctcaaagattgatattcaaagtgg 327  Q
     | || ||||| |||||||||||| ||| ||||||    
T  14474128 ccaacatcttt-tcaaagattgatcttcgaagtgg 14474095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 1616079 - 1615986
Alignment:
Q  62 acttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt-agaagcattgtacaaaactcactttgattcaaca 154  Q
    ||||||||| | |||| |||||| |||| |||||||||||||||||||  ||||||||| ||| ||||||| ||||||||| |||| |||||||    
T  1616079 acttgaacacacattaacatatctaattgttcttttatactttgttattatcaaaacttcagatgcattgttcaaaactcattttggttcaaca 1615986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 2973481 - 2973421
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||||||||||||| ||||||    
T  2973481 tgcacacttaaacatatattagcattttaaattattctttaatactttgttatcatcaaaa 2973421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 12398141 - 12398221
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    |||||||||||||||||||||||||||  ||||||||||  ||||||| ||||| ||||||| ||||| | ||||||||||    
T  12398141 tgcacacttgaacatatattagcatattcaattattcttcaatactttattatcatcaaaactttagaggaattgtacaaa 12398221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 11105639 - 11105693
Alignment:
Q  63 cttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  11105639 cttgaacacatattagtatatctaattattcttttatactttgttatcatcaaaa 11105693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 14580408 - 14580346
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||| ||||||||||||||| |||||| |||| |||||| ||||||||||||| ||||||    
T  14580408 cctgcactcttgaacatatattaacatatctaattgttctttaatactttgttatcatcaaaa 14580346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 33439302 - 33439364
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||||||| |||||||||||||||| |||| |||||| |||| |||||||| ||||||    
T  33439302 cctgcacacttgatcatatattagcatatctaattgttctttaataccttgttatcatcaaaa 33439364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 10751527 - 10751612
Alignment:
Q  55 cctgcacacttgaacatatattagcat---atcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    ||||||||||||| |||||||||||||   ||| |||| |||||| ||||||||||||| ||||||| |||||  |||||||||||    
T  10751527 cctgcacacttgagcatatattagcatcatatccaattgttctttaatactttgttatcatcaaaactttagagacattgtacaaa 10751612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 21617050 - 21617127
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaacttagaagcattgt 131  Q
    |||||||||||||||| ||||||||||||  ||||  |||||| ||||||||||||  |||||||||| || ||||||    
T  21617050 cctgcacacttgaacaaatattagcatattcaattgatcttttaatactttgttattatcaaaacttaaaaacattgt 21617127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 31584091 - 31584007
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaaac 138  Q
    ||||||||||| | ||  ||||| |||||| ||||||||||  ||||||||||||| ||||||| | ||| ||||||||||||||    
T  31584091 cctgcacacttaagcacgtattaacatatccaattattcttcaatactttgttatcatcaaaacatcagaggcattgtacaaaac 31584007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 27983302 - 27983397
Alignment:
Q  60 acacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaaactcactttgattcaaca 154  Q
    |||||| ||||||||||| | |||| ||||||||||| ||| | ||||||| | ||||| ||| | ||||||||||||||| | |||| |||||||    
T  27983302 acacttaaacatatattaccgtatctaattattctttaatattatgttatcattaaaactttataggcattgtacaaaacttattttgtttcaaca 27983397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 1634997 - 1634895
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact-tagaagcattgtacaaaa-ctcactttgattcaa 152  Q
    |||||||||||||||| |||||||| |||| |||| |||  |||||| || ||||| |||||||| | ||  |||||||||||| | || ||||||||||    
T  1634997 cctgcacacttgaacacatattagcctatccaattgttcacttataccttattatcatcaaaactctggagacattgtacaaaaccccattttgattcaa 1634898  T
Q  153 cat 155  Q
    |||    
T  1634897 cat 1634895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 41029690 - 41029755
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||||||| ||||||||| |||||||| |||| |||||   ||||||||||||  ||||||||    
T  41029690 cctgcacacttaaacatatatcagcatatccaattgttcttcattactttgttatcaacaaaactt 41029755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 17103110 - 17103026
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt-agaagcattgtacaaaac 138  Q
    |||||| || |||||||||||||| ||||  ||||  ||||| ||| ||||||||| ||||||||| ||| | ||||||||||||    
T  17103110 cctgcatacgtgaacatatattaggatattcaattgctctttaatattttgttatcatcaaaacttcagaggaattgtacaaaac 17103026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 14024495 - 14024643
Alignment:
Q  194 tggagaatgagtgttgataattgagctatcaacaaaattatcatcaagtatcgattttcaatgcccagacttaatgatttactagatcagttgcatggtg 293  Q
    ||||||||| ||||||||| | ||||| |||||||||||| ||||| ||||||||||   || || |||||| |||||||| ||||| ||||||||||||    
T  14024495 tggagaatgtgtgttgatagtcgagctgtcaacaaaattaccatcacgtatcgatttctgatacctagacttgatgatttattagataagttgcatggtg 14024594  T
Q  294 ctacc-tctttctcaaagattgatattcaaagtgggttctatcaaatcag 342  Q
    | ||| ||||| || ||||||||| ||| |||||| | | ||||||||||    
T  14024595 ccaccatcttt-tccaagattgatcttcgaagtggataccatcaaatcag 14024643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 11420106 - 11420183
Alignment:
Q  60 acacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    |||||||||||||||||| |||||| |||| |||||| ||| ||||||||| |||||| |||||| | ||||||||||    
T  11420106 acacttgaacatatattatcatatccaattgttctttaatattttgttatcatcaaaaccttagaggaattgtacaaa 11420183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 8677291 - 8677211
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact-tagaagcattgtacaaa 136  Q
    ||||||||||||||||||||| |||||  |||| || ||| ||||||||||||| |||||||| |||| | ||||||||||    
T  8677291 tgcacacttgaacatatattaacatattcaattgttttttaatactttgttatcatcaaaactctagaggaattgtacaaa 8677211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 11700986 - 11701084
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaaactcactttgattcaaca 154  Q
    |||| ||||||||| |||||| |||||| ||||||||||| ||||||||||||  ||||||| | | || |||| | |||||| || ||||||||||||    
T  11700986 tgcatacttgaacaaatattaacatatctaattattctttcatactttgttattatcaaaacatcataaacatttttcaaaacccattttgattcaaca 11701084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 20896839 - 20896769
Alignment:
Q  67 aacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    |||||||||||||||||| |||| |||||| ||||||| ||||| |||||| |||||| | ||||||||||    
T  20896839 aacatatattagcatatccaattgttctttaatactttattatcatcaaaatcttagaggaattgtacaaa 20896769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 47576018 - 47576075
Alignment:
Q  60 acacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||||||||||||||||||  || | |||||| ||||||||||||| ||||||    
T  47576018 acacttgaacatatattagcatattcaagtgttctttaatactttgttatcatcaaaa 47576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 17473819 - 17473736
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatac-tttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    ||||||||||||||||||||||| |||||  |||| |||||| |||| ||| ||||| ||||||| |||||||  |||||||||    
T  17473819 cctgcacacttgaacatatattaacatatttaatttttctttaatacttttattatcatcaaaactttagaagatttgtacaaa 17473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 20245745 - 20245820
Alignment:
Q  62 acttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    |||| |||||||| ||||||||| |||| |||||  ||||||||||||| ||||||| | ||| ||||||||||||    
T  20245745 acttaaacatatactagcatatccaattgttcttcaatactttgttatcatcaaaacatcagaggcattgtacaaa 20245820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 5716870 - 5716960
Alignment:
Q  67 aacatatattagcatatcaaattattctttt-atactttgttatcttcaaaac-ttagaagcattgtacaaaactcactttgattcaacat 155  Q
    |||||||||||||||||| |||| ||||||| || | |||||||| ||||||| ||| | |||||||||||||| || |||  ||||||||    
T  5716870 aacatatattagcatatccaattgttcttttcattcattgttatcatcaaaacattataggcattgtacaaaacccaatttagttcaacat 5716960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 16321914 - 16321853
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    |||||||||||||||||| |||| || ||||||| |||||  ||||||||||||| |||||||    
T  16321914 ctgcacacttgaacatatgttagtat-tcaaattgttcttcaatactttgttatcatcaaaac 16321853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 19053593 - 19053654
Alignment:
Q  58 gcacacttgaacatatattagcatatcaaattattcttttatac-tttgttatcttcaaaact 119  Q
    ||||||||||||||||||||||||||| |||| ||| || |||| ||||||||| ||||||||    
T  19053593 gcacacttgaacatatattagcatatctaattgttc-ttaatacttttgttatcatcaaaact 19053654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 19818963 - 19818897
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaactt 120  Q
    |||||||||||||||| ||||||||||||| ||||  |||||| |||  |||||||| |||||||||    
T  19818963 cctgcacacttgaacaaatattagcatatccaattgatcttttaataacttgttatcatcaaaactt 19818897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 21809694 - 21809636
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||| |||||||||||||||||| |||| || ||| ||| ||||||||| ||||||    
T  21809694 cacacttaaacatatattagcatatccaattgttttttaatattttgttatcatcaaaa 21809636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 27941225 - 27941283
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||| ||||||||||||||||||||  ||| |||||| |||||||||| || ||||||    
T  27941225 cacacgtgaacatatattagcatatccgattgttctttcatactttgttgtcatcaaaa 27941283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 10220950 - 10220885
Alignment:
Q  94 ttttatactttgttatcttcaaaactt-agaagcattgtacaaaactcactttgattcaacattgt 158  Q
    ||||||||||||||||  ||||||||| ||| |||||||| |||||||| |||| || ||||||||    
T  10220950 ttttatactttgttattatcaaaacttcagaggcattgtataaaactcattttggtttaacattgt 10220885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 13306751 - 13306686
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaactta 121  Q
    ||||| |||||||| ||||||||||||| ||||   ||||| ||||||||||||| ||||||||||    
T  13306751 tgcacgcttgaacaaatattagcatatctaattgaacttttaatactttgttatcatcaaaactta 13306686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 22222402 - 22222325
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaa 135  Q
    |||||||||||||||||||| || || | || |||||  ||||||||||||| |||||| |||||| | |||||||||    
T  22222402 cacacttgaacatatattagtatgtccacttgttcttcaatactttgttatcatcaaaaccttagaggaattgtacaa 22222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 11449171 - 11449107
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    ||||||||||||||||||||||| ||| || |||| |||||  ||| | ||||||| ||||||||    
T  11449171 cctgcacacttgaacatatattaacatgtccaattgttcttcaatattgtgttatcatcaaaact 11449107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 27765378 - 27765297
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaa 135  Q
    |||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||| |||||| |||||| | |||||||||    
T  27765378 cctgcacatttgaacatatattaacatatccaattattctttaatactttgttatcatcaaaatcttagaggaattgtacaa 27765297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 35511914 - 35511820
Alignment:
Q  62 acttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtac-aaaactcactttgattcaaca 154  Q
    ||||||||||| |||||  ||||||||||||||||||||| | |||||| ||||||| ||| || |||||| | |||||||||||||||||||||    
T  35511914 acttgaacatacattagagtatcaaattattcttttatacatcgttatcatcaaaacattaaaaacattgttctaaaactcactttgattcaaca 35511820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 26712927 - 26713006
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaacttagaagcattgtacaaaac 138  Q
    |||||||||||| ||||||||||||  |||| |||||||||||||| ||||  ||||||||| ||||  |||||||||||    
T  26712927 cacacttgaacacatattagcatattcaattgttcttttatactttattatgatcaaaacttcgaaggcttgtacaaaac 26713006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 22311281 - 22311200
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaa 135  Q
    |||||||||||||||| ||||||| ||||| |||| |||||  ||||||||||||| |||||| |||||| | |||||||||    
T  22311281 cctgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagaggaattgtacaa 22311200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 23959751 - 23959808
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaa 116  Q
    |||||||||||||||||||||||||||| || || ||| ||||||||||||| |||||    
T  23959751 cacacttgaacatatattagcatatcaagttgttatttaatactttgttatcatcaaa 23959808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 18038712 - 18038812
Alignment:
Q  58 gcacacttgaacatatattagcatatcaaattattctttt-atactttgttatc-ttcaaaacttagaagcattgtacaaaactcactttgattcaacat 155  Q
    ||||||||||||||| ||||||||||| |||| ||||||| |||| |||||||| || ||| || ||| ||||||||||||||  | |||| ||||||||    
T  18038712 gcacacttgaacatacattagcatatccaattgttcttttaataccttgttatcattaaaacctaagaggcattgtacaaaacctattttgtttcaacat 18038811  T
Q  156 t 156  Q
    |    
T  18038812 t 18038812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 20587022 - 20586959
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac 118  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||| ||||||| |||| |||||||    
T  20587022 cctgcacacttgaacttatattaacatatctaatttttcttttgtactttgctatcatcaaaac 20586959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 42256584 - 42256639
Alignment:
Q  65 tgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    |||| ||||||||||||||| |||| |||||| ||||||||||||| |||||||||    
T  42256584 tgaatatatattagcatatccaattgttctttaatactttgttatcatcaaaactt 42256639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 19915749 - 19915845
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt-agaagcattgtacaaaactcactttgattcaaca 154  Q
    |||||||||  | ||||||  ||||| |||| ||||| |||||||| ||||||||||||||| |||  |||||||||||| ||| |||| |||||||    
T  19915749 cacacttgacaacatattaatatatcgaattgttcttctatactttattatcttcaaaacttcagacacattgtacaaaattcattttggttcaaca 19915845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 18848739 - 18848798
Alignment:
Q  60 acacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||||| |||||| |||| |||||  ||||||||||||| | ||||||    
T  18848739 acacttgaacatatattatcatatccaattgttcttcaatactttgttatcataaaaact 18848798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 16586657 - 16586595
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    |||||| | ||||||||||||||||||||  |||| || ||| ||||||||||||| ||||||    
T  16586657 cctgcaaatttgaacatatattagcatattcaattcttttttaatactttgttatcatcaaaa 16586595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 19877777 - 19877711
Alignment:
Q  71 tatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaa 136  Q
    ||||||||  |||||| || |||||| ||||||||||||| ||||||| ||||||| ||||||||||    
T  19877777 tatattagtttatcaagttgttctttaatactttgttatcatcaaaacgttagaagaattgtacaaa 19877711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 25348469 - 25348530
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||||||||||||| |||| ||||| |||| |||||  ||||||||||||| ||||||    
T  25348469 cctgcacacttgaacatatgttagtatatc-aattgttcttcaatactttgttatcatcaaaa 25348530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 19115524 - 19115591
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaat---tattcttttatactttgttatcttcaaaact 119  Q
    |||||| ||||||||| |||||||||||||||||   || | ||| ||||||||||||| ||||||||    
T  19115524 cctgcatacttgaacaaatattagcatatcaaattgataatttttaatactttgttatcatcaaaact 19115591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 24844471 - 24844539
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttt--atactttgttatcttcaaaactta 121  Q
    |||||||||||||||| ||||||||||||| ||||  | ||||  |||| |||||||| ||||||||||    
T  24844471 cctgcacacttgaacaaatattagcatatccaattgatatttttaatacattgttatcatcaaaactta 24844539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 25189747 - 25189814
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   ||| ||| |||| |||||||| ||||||||    
T  25189747 cctgcacacttgaacaaatattagcatatccaattgacattttttaataccttgttatcatcaaaact 25189814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 27483881 - 27483816
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    |||||||||||||||| | ||||  |||||||||| |||||| | ||||||||||  |||||||||    
T  27483881 cctgcacacttgaacacacattaatatatcaaattgttctttcaaactttgttatgatcaaaactt 27483816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 24158221 - 24158285
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaac 118  Q
    |||||||||||||||| ||||||||||||| |||||   |||| |||| |||||||| |||||||    
T  24158221 cctgcacacttgaacaaatattagcatatccaattaacattttaataccttgttatcatcaaaac 24158285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 24302651 - 24302585
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    ||||||||||||||| ||||||||||||| ||||   ||| ||| |||| |||||||| ||||||||    
T  24302651 ctgcacacttgaacaaatattagcatatccaattgacattttttaataccttgttatcatcaaaact 24302585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 24764199 - 24764139
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    |||||||||||||| ||||||| ||||| || | |||||  ||||||||||||| ||||||    
T  24764199 tgcacacttgaacaaatattagtatatccaagtgttcttcaatactttgttatcatcaaaa 24764139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 16182670 - 16182732
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact 119  Q
    ||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||    
T  16182670 tgcacactttaacatatattagcacatccaattattctttaatactttgttatcatcaaaact 16182732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 26014153 - 26014226
Alignment:
Q  63 cttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaa 135  Q
    ||||||||||||||| |||||| |||| |||||| ||| ||||||||| |||||| |||||||| |||||||||    
T  26014153 cttgaacatatattaacatatctaattgttctttaatattttgttatcgtcaaaaccttagaagaattgtacaa 26014226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 24884948 - 24884889
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||| ||||||    
T  24884948 tgcacacttgaacatatgttagtatatcaa-ttattctttaatactttgttatcatcaaaa 24884889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 24492145 - 24492067
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa-cttagaagcattgtacaaa 136  Q
    |||||||||||| ||||||| ||||| |||| |||||  ||||||||||||| |||||| |||||| | ||||||||||    
T  24492145 cacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaaccttagaggaattgtacaaa 24492067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 26335284 - 26335228
Alignment:
Q  64 ttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    ||||||||||||||| ||||| |||| |||||| ||| ||||||||| |||||||||    
T  26335284 ttgaacatatattagtatatccaattgttctttaataatttgttatcatcaaaactt 26335228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 2152675 - 2152613
Alignment:
Q  59 cacacttgaacatatattagcatatcaaattat--tcttttatactttgttatcttcaaaact 119  Q
    |||||||||||| ||||||||||||| ||||||  | ||| ||||||||||||| ||||||||    
T  2152675 cacacttgaacaaatattagcatatccaattatcatttttaatactttgttatcatcaaaact 2152613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 18821100 - 18821163
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaactt 120  Q
    |||||||||||||| ||||||| |||| ||||| |||||| ||||||| || || |||||||||    
T  18821100 tgcacacttgaacacatattagtatataaaattgttctttcatactttattgtcatcaaaactt 18821163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 9089309 - 9089376
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||| ||||||||||| ||||||||||||| ||||   ||| ||| ||||||||||||| ||||||||    
T  9089309 cctgtacacttgaacaaatattagcatatccaattgaaattttttaatactttgttatcatcaaaact 9089376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 20237174 - 20237109
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaactta 121  Q
    |||||||||||||| ||||||||||||| ||||   ||||| |||| |||||||| ||||||||||    
T  20237174 tgcacacttgaacaaatattagcatatccaattgaacttttaataccttgttatcatcaaaactta 20237109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 9824663 - 9824738
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaacttagaagcattgta 132  Q
    |||||||||||||||||| |||| || || |||| |||||  ||||||||||||| ||||||| |||| | ||||||    
T  9824663 ctgcacacttgaacatatgttagtatttc-aattgttcttcaatactttgttatcatcaaaacctagaggaattgta 9824738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 24838053 - 24837993
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||||||| ||||||||| |||||| ||||  | ||| ||||||||||||| ||||||    
T  24838053 tgcacacttgatcatatattaacatatccaattgatgtttaatactttgttatcatcaaaa 24837993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 319131 - 319030
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaaactcactttgattcaac 153  Q
    |||||||||||||||| |||||| |||||| |||| || ||  ||||||||||||| ||||||| ||| | |||||||||||||| || ||| |||||||    
T  319131 cctgcacacttgaacacatattaacatatctaattgtttttcaatactttgttatcatcaaaactttaaaggcattgtacaaaacccatttttattcaac 319032  T
Q  154 at 155  Q
    ||    
T  319031 at 319030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 125 - 63
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaa 117  Q
    ||||||| ||||||||||||||| |||||| |||| |||||| ||||||||||||| ||||||    
T  125 cctgcactcttgaacatatattaacatatctaattgttctttaatactttgttatcatcaaaa 63  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 4677 - 4777
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaac-ttagaagcattgtacaaaactcactttgattcaac 153  Q
    |||||||||||||| ||||||||||||||| |||| || |||  ||| ||| |||| ||||||| ||||| | |||||||||||| || |||| ||||||    
T  4677 cctgcacacttgaaaatatattagcatatccaattgttttttactaccttgatatcatcaaaactttagaggtattgtacaaaacccattttgtttcaac 4776  T
Q  154 a 154  Q
    |    
T  4777 a 4777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 5466 - 5545
Alignment:
Q  56 ctgcacacttgaacatatattagcatatcaaattattcttttatactttgttatcttcaaaact-tagaagcattgtacaa 135  Q
    |||||||||||||||||||||| |||||  |||| || ||| ||||||||||||| |||||||| |||| | |||||||||    
T  5466 ctgcacacttgaacatatattaacatatgcaattgtt-tttaatactttgttatcatcaaaactctagaggaattgtacaa 5545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 4644 - 4711
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaactta 121  Q
    |||||||||||||||| ||||||||||||| |||| | | ||| |||| |||||||| ||||||||||    
T  4644 cctgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaactta 4711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 32015 - 32082
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaactta 121  Q
    |||||||||||||||| ||||||||||||| |||| | | ||| |||| |||||||| ||||||||||    
T  32015 cctgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaactta 32082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 6643 - 6561
Alignment:
Q  57 tgcacacttgaacatatattagcatatcaaattattctttt-atactttgttatcttcaaaacttagaagcattgtacaaaac 138  Q
    ||||||| ||||||| |||||||||||| || | ||||||| ||||||||| ||| |||||||||| | | ||||| ||||||    
T  6643 tgcacacgtgaacatttattagcatatccaactgttcttttaatactttgtcatcatcaaaacttaaatgaattgttcaaaac 6561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 159472 - 159539
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    |||||||||||||||| ||||||||||||| ||||   | | ||| ||||||||||||| ||||||||    
T  159472 cctgcacacttgaacaaatattagcatatccaattgacaatttttaatactttgttatcatcaaaact 159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 13240 - 13178
Alignment:
Q  60 acacttgaacatatattagcatatcaaatt---attcttttatactttgttatcttcaaaact 119  Q
    ||||||||||| ||||||||||||||||||   ||| ||| |||| |||||||| ||||||||    
T  13240 acacttgaacaaatattagcatatcaaattgaaattttttaataccttgttatcatcaaaact 13178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 9012 - 8948
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaac 118  Q
    |||||||||||||||| ||||||||||||| |||| | | ||| |||| |||||||| |||||||    
T  9012 cctgcacacttgaacaaatattagcatatctaattgactttttaataccttgttatcatcaaaac 8948  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 112580 - 112644
Alignment:
Q  55 cctgcacacttgaacatatattagcatatcaaatt-attcttttatactttgttatcttcaaaac 118  Q
    |||||||||||||||| ||||||||||||| |||| | | ||| |||| |||||||| |||||||    
T  112580 cctgcacacttgaacaaatattagcatatccaattgactttttaataccttgttatcatcaaaac 112644  T

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