View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16258_low_9 (Length: 395)
Name: NF16258_low_9
Description: NF16258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16258_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 13590627 - 13590880
Alignment:
| Q |
18 |
tgaaccacatcttaatgtaaattaaatacgttaccttattgctattagttttcatttattagagtagtga-ttccatcatgtatgtatatgatgttaatg |
116 |
Q |
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| T |
13590627 |
tgaaccacatcttaatgtaaattaaatacgttaccttattgctattatttttcatttattagagtagtgaattccattatgtatgtatatgatgttaatg |
13590726 |
T |
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| Q |
117 |
atgaggttgttttgttgcggattattaagtttaattgttgtaattttctgaaattgttgatcttttgagatgattcgattcagttatt---tgtcttcaa |
213 |
Q |
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| T |
13590727 |
atgaggttgttttgttgcggattattaagtttaattgttgtaattttctgaaattgttgatcttttgagatgattcgattcagttattatttgtcttcaa |
13590826 |
T |
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| Q |
214 |
taa----tcctatgtaacaatgaatggaataaataaattttatgtggttcatca |
263 |
Q |
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| T |
13590827 |
ttaatagtcctatgtaacaatgaatggaataaataaattttatgtggttcatca |
13590880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 13590944 - 13591002
Alignment:
| Q |
327 |
cctaagttgagtacaagatttggacaaaatataataaaatagaggaatatcacaggttc |
385 |
Q |
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| T |
13590944 |
cctaagttgaatacaagatttggacaaaatataataaaatagaggaatatcacatgttc |
13591002 |
T |
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