View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16259_high_14 (Length: 239)
Name: NF16259_high_14
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16259_high_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39969529 - 39969291
Alignment:
| Q |
1 |
agcatagggagatggattggtgggcactggcactgaaccaaagacgttggcaccacttgagtttgtcgtgttcaagattgatgaacttgtactgcaattt |
100 |
Q |
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| T |
39969529 |
agcagagggagatggattggtgggcactggcactgaaccaaagacgttggcaccacttgagtttgtcgtgttcaagattgatgaacttgtactgcaattt |
39969430 |
T |
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| Q |
101 |
tagttaatagtatcataatttttcagaacttccatttgtgtggcaaaggaaaatgaatgaaattacaagtatatatgtatggaagatattcaccttgtag |
200 |
Q |
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| T |
39969429 |
tagttaatagtatcataatttttcagaacttccatttgtgtggcaaaggaaaatgaatgaaattacaagtatatatgtatggaagatattcaccttgtag |
39969330 |
T |
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| Q |
201 |
atggatattgacatgttcccgtgcctacaaaatttaaac |
239 |
Q |
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| T |
39969329 |
atggatattgacatgttcccgtgcctacaaaatttaaac |
39969291 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 16122938 - 16122888
Alignment:
| Q |
50 |
gcaccacttgagtttgtcgtgttcaagattgatgaacttgtactgcaattt |
100 |
Q |
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| T |
16122938 |
gcaccacttgtgtttgttgtgtttaagagtgatgaacttgtactgcaattt |
16122888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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