View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16259_high_15 (Length: 227)

Name: NF16259_high_15
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16259_high_15
NF16259_high_15
[»] chr5 (2 HSPs)
chr5 (10-124)||(39968921-39969035)
chr5 (172-225)||(39969082-39969135)
[»] chr7 (1 HSPs)
chr7 (22-107)||(13054614-13054699)
[»] chr8 (1 HSPs)
chr8 (33-108)||(1028747-1028822)
[»] chr6 (2 HSPs)
chr6 (22-102)||(21023695-21023775)
chr6 (22-90)||(20599413-20599481)
[»] chr1 (1 HSPs)
chr1 (22-102)||(8757283-8757363)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 39968921 - 39969035
Alignment:
Q  10 ggtccagtaagtgtagctaccagggacattatgtgcaggagctgaggtttgaactccggattttccgcttctccacacatattgtgtgcgaatttagccc 109  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |||||||||||||| |||||||||||||||||     
T  39968921 ggtctagtaagtgtagctaccagggacattatgtgtaggagctgaggtttgaactctggatttcccacttctccacacataatgtgtgcgaatttagcct 39969020  T
Q  110 agtggctacttgacc 124  Q
    |||||||||||||||    
T  39969021 agtggctacttgacc 39969035  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 39969082 - 39969135
Alignment:
Q  172 atcttaaccctccggttttgataatcataaattcagccgaaaagtaaataaaaa 225  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39969082 atcttaaccctccggttttgataatcataaattcatccgaaaagtaaataaaaa 39969135  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 13054614 - 13054699
Alignment:
Q  22 gtagctaccagggacattatgtgcaggagctgaggtttgaactccggattttccgcttctccacacatattgtgtgcgaatttagc 107  Q
    |||||||||||||| | |||||||||| || | |||| |||| || ||||| || |||||||||||||| ||||||||||| ||||    
T  13054614 gtagctaccagggaaaatatgtgcaggggccggggttcgaaccccagatttcccacttctccacacataatgtgtgcgaatctagc 13054699  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 1028747 - 1028822
Alignment:
Q  33 ggacattatgtgcaggagctgaggtttgaactccggattttccgcttctccacacatattgtgtgcgaatttagcc 108  Q
    |||||||||||||||| ||||||||| |||||||||||| | | ||||| || ||||| |||||| |||| |||||    
T  1028747 ggacattatgtgcaggggctgaggttcgaactccggattcttcacttcttcatacataatgtgtgtgaatctagcc 1028822  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 21023775 - 21023695
Alignment:
Q  22 gtagctaccagggacattatgtgcaggagctgaggtttgaactccggattttccgcttctccacacatattgtgtgcgaat 102  Q
    |||||||||||||| | | |||| |||| ||||| || |||| ||||||| ||| |||||||||||||| |||||| ||||    
T  21023775 gtagctaccagggataatttgtgtaggaactgagattcgaaccccggattctccacttctccacacataatgtgtgtgaat 21023695  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 20599481 - 20599413
Alignment:
Q  22 gtagctaccagggacattatgtgcaggagctgaggtttgaactccggattttccgcttctccacacata 90  Q
    |||||||||||||| |||||||||| | |  | ||||||||| |||||||  || ||||||||||||||    
T  20599481 gtagctaccagggatattatgtgcaagggtcggggtttgaaccccggattccccacttctccacacata 20599413  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 8757363 - 8757283
Alignment:
Q  22 gtagctaccagggacattatgtgcaggagctgaggtttgaactccggattttccgcttctccacacatattgtgtgcgaat 102  Q
    ||||||||||| ||||||||||||||| || | |||| |||| | |||||  || | |||||||||||| |||||| ||||    
T  8757363 gtagctaccagagacattatgtgcaggggccggggttcgaaccctggattccccacgtctccacacataatgtgtgtgaat 8757283  T

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