View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16259_low_10 (Length: 318)
Name: NF16259_low_10
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16259_low_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 43 - 318
Target Start/End: Original strand, 30401394 - 30401669
Alignment:
| Q |
43 |
ctccgagaattcaaacggagacagaatatactgaggctagacatttagatcggagaaacggagctcgagaacaagttgaagagaatgttcgttttagtcg |
142 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30401394 |
ctccgagaattcaaacggagacagaacataccaagactagacatttagatcagcgaaatggaactcgagaacaagttgaagagaatgttcgttttagtcg |
30401493 |
T |
|
| Q |
143 |
aactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatcagacattacttttttccctctgcaacaagagagagaactgagagac |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30401494 |
aactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatctgacgttacctttttccctctgcaacaagagagagaactcagagac |
30401593 |
T |
|
| Q |
243 |
gatattcagaatactctaaggcaaacattggaggccgattcaagagtgacaccatcagatcatagtgctaatagtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
30401594 |
gatattcagaatactctaaggcaaacattagaggcagattcaagagtgtcaccatcggatcatagtgcttatagtt |
30401669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 10785453 - 10785255
Alignment:
| Q |
43 |
ctccgagaattcaaacggagacagaatatactgaggctagacatttagatcggagaaacggagctcgagaacaagttgaagagaatgttcgttttagtcg |
142 |
Q |
| |
|
|||| |||||||| || ||||||| | || ||||| ||||||| ||||| | |||| ||||| ||||||| ||||| ||||||||||| || || |
|
|
| T |
10785453 |
ctccaagaattcatactgagacaggaaatgctgagactagacaaatagatagacgaaatggagcccgagaacctgttgatcgcaatgttcgtttcagccg |
10785354 |
T |
|
| Q |
143 |
aactttaagtgttggaagacttcgtgacagagtccttcgtcgatcaacattatcagacattacttttttccctctgcaacaagagagagaactgagaga |
241 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| | || |||||| ||| | ||| | | |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
10785353 |
aactttaagtgtcggaaggcttcgtgatagagttcaccgccgatcaggattggctgacttcaacttttgccctctgacacaagagagagaactgagaga |
10785255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University