View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16259_low_18 (Length: 221)

Name: NF16259_low_18
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16259_low_18
NF16259_low_18
[»] chr3 (10 HSPs)
chr3 (1-203)||(2838779-2838981)
chr3 (39-178)||(2759012-2759151)
chr3 (38-179)||(2768866-2769007)
chr3 (39-168)||(2856021-2856150)
chr3 (2-164)||(2818315-2818480)
chr3 (38-183)||(2790164-2790309)
chr3 (1-148)||(5412664-5412814)
chr3 (39-172)||(2748796-2748929)
chr3 (41-168)||(2807070-2807197)
chr3 (106-183)||(2797226-2797303)
[»] scaffold0691 (1 HSPs)
scaffold0691 (70-203)||(6331-6461)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 2838981 - 2838779
Alignment:
Q  1 cctcctggatgcagatctttatgcatgactccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838981 cctcctggatgcagatctttatgcatgactccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaa 2838882  T
Q  101 ctcacggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagtcctggagaggcagaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838881 ctcacggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagtcctggagaggcagaaaa 2838782  T
Q  201 tgg 203  Q
    |||    
T  2838781 tgg 2838779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 2759012 - 2759151
Alignment:
Q  39 aatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataacttt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  2759012 aatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataacttt 2759111  T
Q  139 caaatttcaaatgaacaaggatcctcaagcagcagcaaca 178  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  2759112 caaatttcaaatgaacaaggatcctcaaacagcagcaaca 2759151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 2768866 - 2769007
Alignment:
Q  38 taatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactt 137  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||| ||||| ||| || ||| ||  ||||||||| |||||||||||||||||| |||    
T  2768866 taatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggtatagctt 2768965  T
Q  138 tcaaatttcaaatgaacaaggatcctcaagcagcagcaacag 179  Q
    ||||| |||| |||||||||||||||||| |||||| |||||    
T  2768966 tcaaacttcacatgaacaaggatcctcaaacagcaggaacag 2769007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 2856150 - 2856021
Alignment:
Q  39 aatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataacttt 138  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| || ||| ||  ||||||||| |||||||| ||||||||||||||    
T  2856150 aatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggtataacttt 2856051  T
Q  139 caaatttcaaatgaacaaggatcctcaagc 168  Q
    ||||||||| | || |||||||||||||||    
T  2856050 caaatttcacacgagcaaggatcctcaagc 2856021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 2818315 - 2818480
Alignment:
Q  2 ctcctggatgcagatcttt---atgcatgactccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgac 98  Q
    |||| ||||||||||||||   ||||| || |||||| ||||| || ||||||| ||||||| |  ||||||||||||||||||| ||||||||| || |    
T  2818315 ctccaggatgcagatctttggtatgcaagattccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtc 2818414  T
Q  99 aactcacggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctc 164  Q
    || ||  ||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  2818415 aattcgtggaatcaaggaaagaagcgagaggtataacttccaaatttcgcatgaacaaggatcctc 2818480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 2790164 - 2790309
Alignment:
Q  38 taatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactt 137  Q
    ||||||||||||||||||||| |||  | || ||||| |||||| || |||| ||| |  ||| ||  ||||||||| ||||||| ||||||||||||||    
T  2790164 taatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggtataactt 2790263  T
Q  138 tcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagt 183  Q
    |||||||||| |   || |||||| |||||||||||||||||||||    
T  2790264 tcaaatttcacagacaccaggatcatcaagcagcagcaacagcagt 2790309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 5412664 - 5412814
Alignment:
Q  1 cctcctggatgcagatcttta---tgcatgactccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctga 97  Q
    |||| ||||||||||||||||   |||| || | |||| || ||||||||||||||||||| |||  | || ||||| |||||||| ||||| ||| ||     
T  5412664 cctcttggatgcagatctttagtctgcaagattgcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgt 5412763  T
Q  98 caactcacggaatcaagaaaagaagcgagaggtataactttcaaatttcaa 148  Q
    ||| ||  ||||||||| ||||||| |||||||||||||||||||||||||    
T  5412764 caattcgtggaatcaaggaaagaagtgagaggtataactttcaaatttcaa 5412814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 2748796 - 2748929
Alignment:
Q  39 aatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataacttt 138  Q
    ||||||||||||||||||||||||  | || ||||| || ||||| ||||| ||  |  ||| ||  ||||||||| ||||||| |||||||||||||||    
T  2748796 aatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataacttt 2748895  T
Q  139 caaatttcaaatgaacaaggatcctcaagcagca 172  Q
    ||||||||| | ||||||||| | ||||||||||    
T  2748896 caaatttcacacgaacaaggaacttcaagcagca 2748929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 2807070 - 2807197
Alignment:
Q  41 tcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactttca 140  Q
    ||||||||||||||||||||||  | || |||||  |||| | |||||| ||| || |   || |||||||||| ||||||| |||||||||||||| ||    
T  2807070 tcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtgagaggtataacttaca 2807169  T
Q  141 aatttcaaatgaacaaggatcctcaagc 168  Q
    ||||||| ||||||||||||| ||||||    
T  2807170 aatttcacatgaacaaggatcatcaagc 2807197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 2797226 - 2797303
Alignment:
Q  106 ggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagt 183  Q
    ||||||||| ||||||| |||||||||||||||||||||||| |   || |||||| |||||||||| ||||||||||    
T  2797226 ggaatcaaggaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcaacaacagcagt 2797303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 6461 - 6331
Alignment:
Q  70 gcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagca 169  Q
    ||||| |||||||| ||||| |||||| ||| ||  ||||||||| | ||||| || ||||||||||||||||||| | ||||||  ||||| |||||      
T  6461 gcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataactttcaaattttacatgaacctggatcatcaagtg 6362  T
Q  170 gcagcaacagcagtcctggagaggcagaaaatgg 203  Q
     ||||| |||||   | |||||||||||||||||    
T  6361 tcagcagcagca---caggagaggcagaaaatgg 6331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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