View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16259_low_3 (Length: 585)

Name: NF16259_low_3
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16259_low_3
NF16259_low_3
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-571)||(231113-231673)
[»] chr1 (9 HSPs)
chr1 (342-451)||(25837226-25837335)
chr1 (110-230)||(30586682-30586802)
chr1 (342-451)||(30588610-30588719)
chr1 (233-343)||(30587922-30588032)
chr1 (11-106)||(30585257-30585352)
chr1 (112-230)||(25835249-25835367)
chr1 (13-106)||(25834441-25834534)
chr1 (233-325)||(25836489-25836581)
chr1 (463-518)||(30588842-30588897)


Alignment Details
Target: scaffold0003 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Original strand, 231113 - 231673
Alignment:
Q  11 cacagaagaagtataatctagccgttaccgttgcaatgggtaaattaatggatgcaattgttgttgaggatgaaaataccacgaaggaatgcatcagaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  231113 cacagaagaagtataatctagccgttaccgttgcaatgggtaaattaatggatgcaattgttgttgaggatgaaaataccgcgaaggaatgcatcagaca 231212  T
Q  111 tttaaaagagctgcggtttcctccccagacatttattcctctacagtctattcgtgtgaacctaataatcgaaagattacgctcgttagggggtaccaca 210  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  231213 tttaaaagagctgcggtttcctccccagacatttattcctttacagtctattcgtgtgaatctaataatcgaaagattacgctcgttagggggtaccaca 231312  T
Q  211 aaactggtttttgatgtgattcagtttgatccttccttggagagggcaattctctttgctgttgggaacactcttgtttgtgaagatcttgaggaggcca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  231313 aaactggtttttgatgtgattcagtttgatccttccttggagagggcaattctctttgctgttgggaacactcttgtttgtgaagatcttgaggaggcca 231412  T
Q  311 aaattttaagctggactggtgagaggttaaaagttgtgactgtggacggaattcttctgacaaaatctggcacaatgactggtggcactagtggtggaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  231413 aaattttaagctggactggtgagaggttaaaagttgtgactgtggacggaattcttctgacaaaatctggcacaatgactggtggcactagtggtggaat 231512  T
Q  411 ggaagcaaggtcaaaaaagtgggatgccaagaaatttgaagaatcttcccagaagaaagagaagtatgaatcgaagttggaagagctaggatcaattaga 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  231513 ggaagcaaggtcaaaaaagtgggatgccaagaaatttgaagaatcttcccagaagaaagagaagtatgaatcgaagttggaagagctaggatcaattaga 231612  T
Q  511 gatatgcatcatattaaagtgtctgaagtagaggaaaaaattagcgaactgaagaagaaag 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  231613 gatatgcatcatattaaagtgtctgaagtagaggaaaaaattagcgaactcaagaagaaag 231673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 342 - 451
Target Start/End: Original strand, 25837226 - 25837335
Alignment:
Q  342 agttgtgactgtggacggaattcttctgacaaaatctggcacaatgactggtggcactagtggtggaatggaagcaaggtcaaaaaagtgggatgccaag 441  Q
    |||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  25837226 agttgtaactgtggacggaattttgctaacaaaatctggcacaatgactggtggcactagtggtggaatggaagcaaggtcaaaacagtgggatgacaag 25837325  T
Q  442 aaatttgaag 451  Q
    | | ||||||    
T  25837326 atacttgaag 25837335  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 30586682 - 30586802
Alignment:
Q  110 atttaaaagagctgcggtttcctccccagacatttattcctctacagtctattcgtgtgaacctaataatcgaaagattacgctcgttagggggtaccac 209  Q
    |||||||||||| | || |||||||||||||||||||||||||||| |||||||| ||||| | |||||| |||||||||||||| |||||||||||  |    
T  30586682 atttaaaagagcagaggcttcctccccagacatttattcctctacaatctattcgggtgaagcaaataatggaaagattacgctcattagggggtacagc 30586781  T
Q  210 aaaactggtttttgatgtgat 230  Q
    |||||||||||| ||||||||    
T  30586782 aaaactggttttcgatgtgat 30586802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 342 - 451
Target Start/End: Original strand, 30588610 - 30588719
Alignment:
Q  342 agttgtgactgtggacggaattcttctgacaaaatctggcacaatgactggtggcactagtggtggaatggaagcaaggtcaaaaaagtgggatgccaag 441  Q
    |||||| || ||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  30588610 agttgtaaccgtggatggaattttgctgacaaaatccggcacaatgactggtggcactagtggtggaatggaagcaaggtcaaaacagtgggatgacaag 30588709  T
Q  442 aaatttgaag 451  Q
    | | ||||||    
T  30588710 atacttgaag 30588719  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 30587922 - 30588032
Alignment:
Q  233 agtttgatccttccttggagagggcaattctctttgctgttgggaacactcttgtttgtgaagatcttgaggaggccaaaattttaagctggactggtga 332  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||  || ||    
T  30587922 agtttgatccctccttggagaaggcaattctttttgctgttgggaatactcttgtttgtgaagacctcgaggaagccaaaattttaagctggagcgggga 30588021  T
Q  333 gaggttaaaag 343  Q
    |||||| ||||    
T  30588022 gaggtttaaag 30588032  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 30585257 - 30585352
Alignment:
Q  11 cacagaagaagtataatctagccgttaccgttgcaatgggtaaattaatggatgcaattgttgttgaggatgaaaataccacgaaggaatgcatca 106  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||| |||  ||||||||||||||    
T  30585257 cacagaagaagtataacctagccgttacagttgctatgggtaaattaatggatgcagttgttgtggaggatgaaaagaccgggaaggaatgcatca 30585352  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 25835249 - 25835367
Alignment:
Q  112 ttaaaagagctgcggtttcctccccagacatttattcctctacagtctattcgtgtgaacctaataatcgaaagattacgctcgttagggggtaccacaa 211  Q
    |||||||||| | || |||||||||||||||||||||||||||| |||||  ||||||| | || ||| |||||||| ||||| |||||||||||  |||    
T  25835249 ttaaaagagcagaggcttcctccccagacatttattcctctacaatctatctgtgtgaagcaaagaatggaaagattgcgctcattagggggtacagcaa 25835348  T
Q  212 aactggtttttgatgtgat 230  Q
    |||||||||| ||||||||    
T  25835349 aactggttttcgatgtgat 25835367  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 25834441 - 25834534
Alignment:
Q  13 cagaagaagtataatctagccgttaccgttgcaatgggtaaattaatggatgcaattgttgttgaggatgaaaataccacgaaggaatgcatca 106  Q
    |||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||| || | ||||||||||||||    
T  25834441 cagaagaagtttaacctagccgttactgttgctatgggtaaattaatggatgcagttgttgtggaggatgaaaagactaggaaggaatgcatca 25834534  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 25836489 - 25836581
Alignment:
Q  233 agtttgatccttccttggagagggcaattctctttgctgttgggaacactcttgtttgtgaagatcttgaggaggccaaaattttaagctgga 325  Q
    |||||||||| ||| |||||| ||||||||| |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||||||    
T  25836489 agtttgatccctccatggagaaggcaattctatttgctgtcgggaatactcttgtttgtgaagacctcgaggaagccaaaattttaagctgga 25836581  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 518
Target Start/End: Original strand, 30588842 - 30588897
Alignment:
Q  463 aagaaagagaagtatgaatcgaagttggaagagctaggatcaattagagatatgca 518  Q
    ||||||||| ||||||| ||| ||||||||| | |||||||||| |||||||||||    
T  30588842 aagaaagaggagtatgagtcggagttggaagggataggatcaataagagatatgca 30588897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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