View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16259_low_4 (Length: 488)
Name: NF16259_low_4
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16259_low_4 |
 | |
|
| [»] scaffold0295 (2 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 273 - 471
Target Start/End: Complemental strand, 2320248 - 2320050
Alignment:
| Q |
273 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
372 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2320248 |
gggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
2320149 |
T |
|
| Q |
373 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
471 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2320148 |
tagcttcactttccaaatttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
2320050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 409
Target Start/End: Complemental strand, 38544340 - 38544223
Alignment:
| Q |
292 |
ccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaact |
391 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| || |||||||||| ||||||||| |||| |||| || || ||| | ||| | ||||||||| |
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|
| T |
38544340 |
ccaccatgggaaacacaagatcaatggttagattgtacacttctattaaatcttatcatgctctctcacacctaattctaatggtttctcattccaaact |
38544241 |
T |
|
| Q |
392 |
tttctcatcttgctccca |
409 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
38544240 |
tttctcatcttcctccca |
38544223 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 273 - 471
Target Start/End: Complemental strand, 16990632 - 16990434
Alignment:
| Q |
273 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
372 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16990632 |
gggaaggtataaaacctttccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
16990533 |
T |
|
| Q |
373 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16990532 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
16990434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 273 - 471
Target Start/End: Original strand, 37241968 - 37242166
Alignment:
| Q |
273 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
372 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37241968 |
gggaaggtataaaaccttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
37242067 |
T |
|
| Q |
373 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37242068 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
37242166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 251 - 471
Target Start/End: Original strand, 1258663 - 1258878
Alignment:
| Q |
251 |
gaggtggcatttcacatgggaagggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcat |
350 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1258663 |
gaggtggcatttcacatgggaagg-----tataaaaccttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcat |
1258757 |
T |
|
| Q |
351 |
gttctcccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaacc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1258758 |
gttctcccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctctaggctccatctcccacaacc |
1258857 |
T |
|
| Q |
451 |
agcaaccaccttcaaagaaac |
471 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1258858 |
agcaaccaccttcaaagaaac |
1258878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 252 - 471
Target Start/End: Complemental strand, 34873736 - 34873534
Alignment:
| Q |
252 |
aggtggcatttcacatgggaagggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatg |
351 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34873736 |
aggtggcatttcacatgggaagg-----tataaaaccttcccaccatggatcacacaagata------------gtgcatttctattaaagcttatcatg |
34873654 |
T |
|
| Q |
352 |
ttctcccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaacca |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34873653 |
ttctcccacatctgatctcaatagcttcactttccaaacttttgtcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaacca |
34873554 |
T |
|
| Q |
452 |
gcaaccaccttcaaagaaac |
471 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34873553 |
gcaaccaccttcaaagaaac |
34873534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 13809952 - 13810019
Alignment:
| Q |
283 |
aaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcat |
350 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
13809952 |
aaaacttttccaccatgggtcacacaagataaatggttacattgtgcacttctattaaagcttatcat |
13810019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 273 - 471
Target Start/End: Original strand, 31234131 - 31234329
Alignment:
| Q |
273 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
372 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31234131 |
gggaaggtataaaaccttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcctacatctgatctcaa |
31234230 |
T |
|
| Q |
373 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234231 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggtcgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaac |
31234329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 273 - 404
Target Start/End: Original strand, 18246192 - 18246323
Alignment:
| Q |
273 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
372 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18246192 |
gggaaggtataaaactttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
18246291 |
T |
|
| Q |
373 |
tagcttcactttccaaacttttctcatcttgc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18246292 |
tagcttcactttccaaacttttctcatcttgc |
18246323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 39087518 - 39087407
Alignment:
| Q |
289 |
ttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa |
388 |
Q |
| |
|
|||||||||| | ||||| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || |||| ||| ||||| |||||||| |
|
|
| T |
39087518 |
ttcccaccatagatcacataaaataaatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaa |
39087419 |
T |
|
| Q |
389 |
acttttctcatc |
400 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39087418 |
acttttctcatc |
39087407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 42551575 - 42551473
Alignment:
| Q |
10 |
ataatactcgag-acatgggaagttaaagtgaaatgagtcgatagtgttgttaccttttatgatttc--------cttcaatgacataagagctcatttc |
100 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
42551575 |
ataatactcgaggacatgggaaattaaagtgaaatgagtccgtagtgttgttaccttttatgatctcctgggacacttcaatgacataagagctcatttc |
42551476 |
T |
|
| Q |
101 |
tgt |
103 |
Q |
| |
|
||| |
|
|
| T |
42551475 |
tgt |
42551473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 41687674 - 41687598
Alignment:
| Q |
101 |
tgtgcgcaacacagaaaccagttcctggatgctcatgtcttccatgttcctatggtcacttgaacccaacccaggtt |
177 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||||||| || ||||||||||| |||| ||||||||||| |
|
|
| T |
41687674 |
tgtgcgtaacacagaaaccagttcatgaatgctcatgtcttccaaatttctatggtcactcgaactcaacccaggtt |
41687598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 41659662 - 41659739
Alignment:
| Q |
100 |
ctgtgcgcaacacagaaaccagttcctggatgctcatgtcttccatgttcctatggtcacttgaacccaacccaggtt |
177 |
Q |
| |
|
|||| ||| |||| ||||| |||||||| |||||||||||||||| ||| ||||||||| |||||| ||||||||||| |
|
|
| T |
41659662 |
ctgtacgcgacaccgaaacaagttcctgaatgctcatgtcttccaagtttctatggtcatttgaacacaacccaggtt |
41659739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 11203 - 11105
Alignment:
| Q |
13 |
atactcgagacatgggaagttaaagtgaaatgagtcgatagtgttgttaccttttatgatttcc--------ttcaatgacataagagctcatttctgt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
11203 |
atactcgagacatgggaagttaaagtgaaatgagttggtagtgttgttaccttttatgatctccttggacctttcaatgacataagagctcatttctgt |
11105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 11978 - 12073
Alignment:
| Q |
16 |
ctcgagacatgggaagttaaagtgaaatgagtcgatagtgttgttaccttttatgatttcc--------ttcaatgacataagagctcatttctgt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
11978 |
ctcgagacatgggaagttaaagtgaaatgagttggtagtgttgttaccttttatgatctcctaggacctttcaatgacataagagctcatttctgt |
12073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 296 - 400
Target Start/End: Complemental strand, 20040276 - 20040174
Alignment:
| Q |
296 |
catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaacttttc |
395 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| |||| || |||||||||||| |
|
|
| T |
20040276 |
catggatcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggctt--ctctccaaacttttc |
20040179 |
T |
|
| Q |
396 |
tcatc |
400 |
Q |
| |
|
||||| |
|
|
| T |
20040178 |
tcatc |
20040174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 157199 - 157300
Alignment:
| Q |
10 |
ataatactcgagacatgggaagttaaagtgaaatgagtcgatagtgttgttaccttttatgatttcc--------ttcaatgacataagagctcatttct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
157199 |
ataatactcgagacatgggaagttaaagtgaaatgagttggcagtgttgttaccttttataatctcctgggacctttcaatgacataagagctcatttct |
157298 |
T |
|
| Q |
102 |
gt |
103 |
Q |
| |
|
|| |
|
|
| T |
157299 |
gt |
157300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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