View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16259_low_6 (Length: 405)
Name: NF16259_low_6
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16259_low_6 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 47281494 - 47281107
Alignment:
| Q |
19 |
gatcctacttctctcttgcttttggaaactctcctccgatcatgtcaataccacggtctgcttcttttttgatactttatgtcaaatttatgtgccgaga |
118 |
Q |
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| T |
47281494 |
gatcctacttctctcttgcttttggaaactctcctccgatcatgtcaataccacggtctgcttctttttttatactttatgtcaaatttatgtgccgaga |
47281395 |
T |
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| Q |
119 |
gatatggttaattattttattatactttgtacctgttattgcttggatttcagaatctctctatttccacatggttagaatttttgtttttcaagtatat |
218 |
Q |
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| T |
47281394 |
gatatggttaattattttattatactttgtacctgttattgcttggatttcagaatctctctatttctacatggttagaatttttgtttttcaagtattt |
47281295 |
T |
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| Q |
219 |
cacaattgctctgttctagtcctggatatacatgcaaagtgta-tttgctcgttctgaataatatctatcttatttatttttgacttgggattgcagtaa |
317 |
Q |
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| T |
47281294 |
cacaattgctctgttctagtcctggatatacatgcaaagtgtactttgctcgttctgaataatatctatcttatttatttttgacttgggattgcagtaa |
47281195 |
T |
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| Q |
318 |
ccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttgacctggtaatcgctgaagttcacatgcc |
405 |
Q |
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| T |
47281194 |
ccacaactagtgaagcaataactgcattgactatgttgcaagaaaacatagacatgtttgacctggtaatcgctgaagttcacatgcc |
47281107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 133 - 297
Target Start/End: Complemental strand, 38099392 - 38099213
Alignment:
| Q |
133 |
ttttattatactttgtacctgttattgcttggatttcagaatctctctatttccacatggttagaat-ttttgtttttcaagtatatcacaattgc--tc |
229 |
Q |
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| T |
38099392 |
ttttattatactttgtacatgttattgcttggatttcagaatctctctatttgtacatggttagaattttttgtttttcaagtatttcacaattgctttc |
38099293 |
T |
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| Q |
230 |
tgttctagtcc-------tggatatacatgcaaagtgta-tttgc----tcgttctgaataatatctatcttatttattt |
297 |
Q |
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| T |
38099292 |
tgtgctggtcctggataatggatatacatgcaaagtgtactttgctcgatcgttctgaataataactatcttatttattt |
38099213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 47275529 - 47275441
Alignment:
| Q |
305 |
gggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttgacctggtaatcgctga |
393 |
Q |
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| T |
47275529 |
gggattgcagtaacgacaactagtcaagcaaaaacggcattgactatgttgcgagaaaacaaagacaagtttgacctggtaatcgctga |
47275441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 405
Target Start/End: Complemental strand, 49061346 - 49061233
Alignment:
| Q |
292 |
ttatttttgacttgggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttgacctggtaatcgct |
391 |
Q |
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| T |
49061346 |
ttatttctgactggggattgcagtaaccacaactagtcaagcaataacggcgttgaccatgttgagagaaaacaaagacaagtttgacctggtaatcagt |
49061247 |
T |
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| Q |
392 |
gaagttcacatgcc |
405 |
Q |
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| T |
49061246 |
gatgtacacatgcc |
49061233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 47276089 - 47276046
Alignment:
| Q |
43 |
gaaactctcctccgatcatgtcaataccacggtctgcttctttt |
86 |
Q |
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| T |
47276089 |
gaaactcgtctccgatcatgtcaataccacggtctgcttctttt |
47276046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 49062403 - 49062346
Alignment:
| Q |
19 |
gatcctacttctctcttgcttttggaaactctcctccgatcatgtcaataccacggtc |
76 |
Q |
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| T |
49062403 |
gatccaacttgtctcttggttttggaaactcttctccgaagatgtcaataccacggtc |
49062346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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