View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16259_low_7 (Length: 385)
Name: NF16259_low_7
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16259_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 16309024 - 16308667
Alignment:
| Q |
17 |
gtttctaacttgtgcttatctctaccggatgcaaaacactacatcttgtaacatgttctattctaaacagtgcataattgatatttctgttctggccgtt |
116 |
Q |
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| T |
16309024 |
gtttctaacttgtgcttatctctaccggatgcaaaacactacatcttgtaacatgttctattctaaaccgtgcataattgatatttctgttctggccgtt |
16308925 |
T |
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| Q |
117 |
tctcatattcatgtaagtgtttacatagagagagggattacattagatatgccgcaaaatccaaaaatcgccttcatgtttttgactcctggttctttac |
216 |
Q |
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| T |
16308924 |
tctcatattcctgtaagtgtttacatagagagagggattacattagatatgccgcaaaatccaaaaatcgccttcatgtttttgactcctggttctttac |
16308825 |
T |
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| Q |
217 |
catttgagaaattgtgggataacttcttccaagtaaggattgtttgttacctatctaatctattattttgaattcaatatttgaaccatgtaatgttaat |
316 |
Q |
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| T |
16308824 |
catttgagaaattgtgggataacttcttccaagtaaggattgtttgttacctatctaatctattattttgaattcaatatttgaaccatgtaatgttaat |
16308725 |
T |
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| Q |
317 |
ttgcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttctt |
374 |
Q |
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| T |
16308724 |
ttgcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttctt |
16308667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 16300451 - 16300355
Alignment:
| Q |
164 |
tatgccgcaaaatccaaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtt |
260 |
Q |
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| T |
16300451 |
tatgccaccaaatccaaaagtcgccttcatgtttttgactcctggttctctaccatttgaaaaattgtgggataactttttccaagtaaggattgtt |
16300355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 16300627 - 16300564
Alignment:
| Q |
18 |
tttctaacttgtgcttatctctaccggatgcaaaacactacatcttgtaacatgttctattcta |
81 |
Q |
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| T |
16300627 |
tttctaacttgtgcttatctcttccggccgcaaaacagtacagattgtaacatgttctcttcta |
16300564 |
T |
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