View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16259_low_8 (Length: 362)
Name: NF16259_low_8
Description: NF16259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16259_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 51987727 - 51988065
Alignment:
| Q |
9 |
gagatgaaaaaacacatgaactctttttcaagagcgaatctcataggaatgcctcaattcaaagagataggcacatgcgaattaacagagaaattgcaaa |
108 |
Q |
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| T |
51987727 |
gagatgaaaaaacacatgaactctttttcaagagcgaatctcataggaatgcctcaattcgaagagataggcacatgcgaattaacagagaaattgcaaa |
51987826 |
T |
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| Q |
109 |
ggaatatgcagcgccacactgtttcggtgaacgaagagaatgatgatatggaacatgaaactgatgatggttctccaacacctttctctaaagcaattaa |
208 |
Q |
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| T |
51987827 |
ggaatatgcagcgccacactgtttcggtgaacgaagagaatgatgatatggaacatgaaactgatgatggttctccaacacctttctctaaagcaattaa |
51987926 |
T |
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| Q |
209 |
agctattccagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaaagaga |
308 |
Q |
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| T |
51987927 |
agctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaaagaga |
51988026 |
T |
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| Q |
309 |
agctttagtgttccttcattgcaagaattgtgccttaac |
347 |
Q |
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| T |
51988027 |
agctttagtgttccttcattgcaagaattgtgccttaac |
51988065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 298
Target Start/End: Complemental strand, 52001767 - 52001617
Alignment:
| Q |
148 |
atgatgatatggaacatgaaactgatgatggttctccaacacctttctctaaagcaattaaagctattccagaaagaatcgccaaaagcatgaaaaaagg |
247 |
Q |
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| T |
52001767 |
atgatgatgtggaacatgaagttgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggg |
52001668 |
T |
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| Q |
248 |
gcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagattt |
298 |
Q |
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| T |
52001667 |
gtttgtcgatgaatcccttacttgggtttcaaaactgaatggtgaagattt |
52001617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 52011610 - 52011508
Alignment:
| Q |
170 |
tgatgatggttctccaacacctttctctaaagcaattaaagctattccagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatt |
269 |
Q |
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|||||||| ||||||||||||||||||| ||||||| |||||||||| ||| |||| || ||||||| |||||||||| ||||| | ||||| ||||| |
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| T |
52011610 |
tgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatt |
52011511 |
T |
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| Q |
270 |
tgg |
272 |
Q |
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||| |
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| T |
52011510 |
tgg |
52011508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 11749425 - 11749250
Alignment:
| Q |
164 |
tgaaactgatgatggttctccaacacctttctctaaagcaattaaagctattccagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatct |
263 |
Q |
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||||| |||||||||||||||||| |||||||| || |||| |||||||||| |||| |||| ||||||| || ||||| ||| ||||||||||||| |
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| T |
11749425 |
tgaaattgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcc |
11749326 |
T |
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| Q |
264 |
cttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgt |
339 |
Q |
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||||||||| | | ||| |||| ||||||||||| || ||||| ||| |||||||||||||| ||||||||| |
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| T |
11749325 |
cttatttgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgt |
11749250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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