View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16260_low_1 (Length: 767)

Name: NF16260_low_1
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16260_low_1
NF16260_low_1
[»] chr2 (17 HSPs)
chr2 (379-740)||(35918943-35919304)
chr2 (12-131)||(4730682-4730801)
chr2 (368-440)||(35542303-35542375)
chr2 (368-440)||(35559641-35559713)
chr2 (14-125)||(35243106-35243218)
chr2 (338-422)||(35887539-35887626)
chr2 (117-178)||(4730610-4730671)
chr2 (64-114)||(12419537-12419587)
chr2 (64-114)||(12431597-12431647)
chr2 (62-125)||(20105337-20105402)
chr2 (88-125)||(39711724-39711761)
chr2 (492-582)||(34989810-34989904)
chr2 (63-111)||(39228901-39228949)
chr2 (63-114)||(5136187-5136238)
chr2 (64-111)||(9848112-9848159)
chr2 (63-114)||(18482108-18482159)
chr2 (75-108)||(38002026-38002059)
[»] scaffold0174 (2 HSPs)
scaffold0174 (12-131)||(30562-30681)
scaffold0174 (116-178)||(30490-30552)
[»] chr1 (6 HSPs)
chr1 (12-131)||(2688393-2688512)
chr1 (114-163)||(2688520-2688569)
chr1 (64-111)||(48563257-48563304)
chr1 (64-111)||(50959523-50959570)
chr1 (75-105)||(19757765-19757795)
chr1 (81-111)||(29013825-29013855)
[»] chr7 (4 HSPs)
chr7 (66-114)||(10623350-10623398)
chr7 (58-111)||(10019743-10019796)
chr7 (77-118)||(28302166-28302207)
chr7 (71-108)||(5907018-5907055)
[»] chr4 (3 HSPs)
chr4 (85-137)||(21481176-21481228)
chr4 (63-111)||(1745438-1745486)
chr4 (76-111)||(38011672-38011707)
[»] chr8 (2 HSPs)
chr8 (64-109)||(1029736-1029781)
chr8 (64-111)||(41566184-41566231)
[»] chr5 (1 HSPs)
chr5 (58-125)||(24099420-24099486)
[»] chr3 (2 HSPs)
chr3 (63-129)||(28159065-28159130)
chr3 (75-129)||(28180530-28180583)
[»] chr6 (3 HSPs)
chr6 (75-111)||(29032701-29032737)
chr6 (64-111)||(8210013-8210060)
chr6 (83-137)||(17459206-17459258)
[»] scaffold0756 (1 HSPs)
scaffold0756 (80-111)||(4094-4125)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 379 - 740
Target Start/End: Original strand, 35918943 - 35919304
Alignment:
Q  379 gcaggaacttcttcccagaaaagaaaaggacgccctcctggttccggtgtgggaagattcacccctcatatgatgaatttgaatgctggccagggagcat 478  Q
    |||| |||||||||| ||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |||| || ||    
T  35918943 gcagaaacttcttccaagaaaagaaaagggcaccctcctggttccggtgggggaacattcacccctcatataatgaatttgaatgctggtcaggtagtat 35919042  T
Q  479 aacattaattaaccaatcttcacatgccatatgaaattttatatttcatttattaaatatatggttttttaattaagaattgttttgtaggatttggtgg 578  Q
    ||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  35919043 aactttaattaaccaatcttcgcattccatatgcaattttatatttcatttattaaatatatggttttttaattaattattgttttgtaggatttggtgg 35919142  T
Q  579 atgccatatacaatctatctgaagcaattcttcgtcattctgttattatacattctgcaacaggtcttatatcagagcttggccttcttgatccaaatgg 678  Q
    | || ||||||||||||||||||||| | | |||||  |||||||| ||| |||| |||||||||  | |||||||| |||||||| |||||||||||||    
T  35919143 acgctatatacaatctatctgaagcattacctcgtcgatctgttatcataaattcggcaacaggttctgtatcagaggttggcctttttgatccaaatgg 35919242  T
Q  679 tcctcctaacatgcgccagataactaaaggtctaaaatctgataaaattttgcatcatatcg 740  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||||| ||||||||||||||    
T  35919243 tcctcctaacaagcgccaggtaattaaaggtccaaaatctgataaaactttgcatcatatcg 35919304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 4730801 - 4730682
Alignment:
Q  12 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4730801 atcatcagagagtcaagcgtacatgccaccaaacacaacaagttacaatctgacgcgttagaactcagatcgtgggatgagtccaatacgttagtaacca 4730702  T
Q  112 aacagaccctttcgagttta 131  Q
    |||||||||||||| |||||    
T  4730701 aacagaccctttcgggttta 4730682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 35542375 - 35542303
Alignment:
Q  368 aaacaacttctgcaggaacttcttcccagaaaagaaaaggacgccctcctggttccggtgtgggaagattcac 440  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35542375 aaactacttctgcagaaacttcttcccagaaaagaaaaggacgccctcctggttccggtgggggaagattcac 35542303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 35559713 - 35559641
Alignment:
Q  368 aaacaacttctgcaggaacttcttcccagaaaagaaaaggacgccctcctggttccggtgtgggaagattcac 440  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35559713 aaactacttctgcagaaacttcttcccagaaaagaaaaggacgccctcctggttccggtgggggaagattcac 35559641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 35243218 - 35243106
Alignment:
Q  14 catcagagagtc-aagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaa 112  Q
    |||||||||||| ||||  ||| ||||||||||||||||||||| |||| || | |||| || |||||||| |||||||||||| |||| ||||||||||    
T  35243218 catcagagagtccaagcagacatgccaccaaacacaacaagttacaatctgatgtgttacatatcagatcgagggatgagtccattacgctagtaaccaa 35243119  T
Q  113 acagaccctttcg 125  Q
    |||||||||||||    
T  35243118 acagaccctttcg 35243106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 35887539 - 35887626
Alignment:
Q  338 ccaagaagagaatagaaggacct---gaaactgaaacaacttctgcaggaacttcttcccagaaaagaaaaggacgccctcctggttc 422  Q
    |||||||||||| ||||||||||   ||||||||||||||||||| || |||||||||| |||||||||||||| ||||| |||||||    
T  35887539 ccaagaagagaaaagaaggaccttctgaaactgaaacaacttctgaagaaacttcttccaagaaaagaaaaggatgcccttctggttc 35887626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 4730671 - 4730610
Alignment:
Q  117 accctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 178  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  4730671 accctttcgggattatgaaaccaaagcaaaaggtcaagtctgcacccatcaatctcagctct 4730610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 12419537 - 12419587
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 114  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12419537 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12419587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 12431597 - 12431647
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 114  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12431597 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12431647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 20105402 - 20105337
Alignment:
Q  62 cgacgcgttagatctcagatcgtgggatgagtccaatacgtt--agtaaccaaacagaccctttcg 125  Q
    |||||||| ||| ||||||||| | |||||||||||||||||  ||||||||| ||||||||||||    
T  20105402 cgacgcgtaagaactcagatcgagtgatgagtccaatacgttaaagtaaccaatcagaccctttcg 20105337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 39711724 - 39711761
Alignment:
Q  88 atgagtccaatacgttagtaaccaaacagaccctttcg 125  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39711724 atgagttcaatacgttagtaaccaaacagaccctttcg 39711761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 582
Target Start/End: Original strand, 34989810 - 34989904
Alignment:
Q  492 caatcttcacatgccatatgaaattttatatttcatttattaaa---tatatggttttttaattaa-gaattgttttgtaggatttggtggatgc 582  Q
    |||||||||| |  |||||| |||||||||||||||| ||||||   |||||||||||  ||||||  |||| ||||| ||||||||||||||||    
T  34989810 caatcttcacttttcatatgcaattttatatttcattcattaaatattatatggttttgcaattaattaattattttgcaggatttggtggatgc 34989904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 39228949 - 39228901
Alignment:
Q  63 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    ||||||| ||| ||||||||| |||||||||| ||||||||||||||||    
T  39228949 gacgcgtaagaactcagatcgagggatgagtcgaatacgttagtaacca 39228901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 5136238 - 5136187
Alignment:
Q  63 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 114  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| || ||||||    
T  5136238 gacgcgtaagaactcagatcgagggatgagtccaatacgttaatagccaaac 5136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 9848159 - 9848112
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  9848159 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 9848112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 18482108 - 18482159
Alignment:
Q  63 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 114  Q
    ||||||| ||| ||||||||| ||||||||||||||| |||| |||||||||    
T  18482108 gacgcgtaagaactcagatcgagggatgagtccaatatgttaataaccaaac 18482159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 38002059 - 38002026
Alignment:
Q  75 ctcagatcgtgggatgagtccaatacgttagtaa 108  Q
    ||||||||| ||||||||||||||||||||||||    
T  38002059 ctcagatcgagggatgagtccaatacgttagtaa 38002026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 30681 - 30562
Alignment:
Q  12 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30681 atcatcagagagtcaagcctgcacgcaaccaaacacaacaagttacaatctgacgcgttagaactcatatcgtgggatgagtccaatacgttagtaacca 30582  T
Q  112 aacagaccctttcgagttta 131  Q
    |||||||||||||| |||||    
T  30581 aacagaccctttcgggttta 30562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 30552 - 30490
Alignment:
Q  116 gaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 178  Q
    |||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  30552 gaccctttcgggtttatgaaaccaacgcaaaaggtcaagtctgcacccaccaatctcagctct 30490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 2688393 - 2688512
Alignment:
Q  12 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    ||||||| ||||||||||  |||| |||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  2688393 atcatcaaagagtcaagcacacacaccaccaaacacaacaagttacaatctgatgcgttagaactcagatcgtgggatgagtccaatacgttagtaacca 2688492  T
Q  112 aacagaccctttcgagttta 131  Q
    ||||||| |||||| |||||    
T  2688493 aacagactctttcgggttta 2688512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 2688520 - 2688569
Alignment:
Q  114 cagaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcaccc 163  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2688520 cagaccctttcgggtttatgaaaccaaagcaaaaggtcaagactgcaccc 2688569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 48563304 - 48563257
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||| ||| || |||||||||||||||||||||| |||||||||||    
T  48563304 acgcgtaagaacttagatcgtgggatgagtccaatatgttagtaacca 48563257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 50959523 - 50959570
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  50959523 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 50959570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 19757795 - 19757765
Alignment:
Q  75 ctcagatcgtgggatgagtccaatacgttag 105  Q
    |||||||||||||||||||||||||||||||    
T  19757795 ctcagatcgtgggatgagtccaatacgttag 19757765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 29013825 - 29013855
Alignment:
Q  81 tcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||||||||||||||||||||||||||||    
T  29013825 tcgtgggatgagtccaatacgttagtaacca 29013855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 10623398 - 10623350
Alignment:
Q  66 gcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 114  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  10623398 gcgttagaactcagatcgagggatgagtccaatacgttagtaaccaaac 10623350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 10019743 - 10019796
Alignment:
Q  58 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||| ||||||| ||| |||| |||| |||||||||||||||||||||||||||    
T  10019743 aatcagacgcgtaagaactcaaatcgagggatgagtccaatacgttagtaacca 10019796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 28302166 - 28302207
Alignment:
Q  77 cagatcgtgggatgagtccaatacgttagtaaccaaacagac 118  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  28302166 cagatcgagggatgagtccaatacgttagtaaccaaatagac 28302207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 5907055 - 5907018
Alignment:
Q  71 agatctcagatcgtgggatgagtccaatacgttagtaa 108  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5907055 agatctcatatcgagggatgagtccaatacgttagtaa 5907018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 21481176 - 21481228
Alignment:
Q  85 gggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 137  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  21481176 gggatgagtccaattcgtgagtaaccaaacagaccctttcgagtttttgaaac 21481228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 1745486 - 1745438
Alignment:
Q  63 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||||||    
T  1745486 gacgcgtaagaactcagattgagggatgagtccaatacgttagtaacca 1745438  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 38011672 - 38011707
Alignment:
Q  76 tcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||||| |||||||||||||||||||||||||||    
T  38011672 tcagatcgagggatgagtccaatacgttagtaacca 38011707  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 1029736 - 1029781
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaac 109  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  1029736 acgcgtaagaactcagatcgtgggatgagtccaatacgttagtaac 1029781  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 41566231 - 41566184
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  41566231 acgcgtaagaactcagatcgtgggatgagtctaatacgttagtaacca 41566184  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 24099486 - 24099420
Alignment:
Q  58 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcg 125  Q
    |||||||||||| | | ||||||||| ||||||||| |||||||||| ||||| ||||||||||||||    
T  24099486 aatccgacgcgtaaaaactcagatcgagggatgagttcaatacgttaataacc-aacagaccctttcg 24099420  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 28159065 - 28159130
Alignment:
Q  63 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 129  Q
    |||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||| ||||||| |||||    
T  28159065 gacgtgtttgatctcagatcgagggatgagttcaatatgttagtaaccaaaca-acccttttgagtt 28159130  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 28180530 - 28180583
Alignment:
Q  75 ctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 129  Q
    ||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  28180530 ctcagattgagggatgagttcaatacgttagtaaccaaaca-acccttttgagtt 28180583  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 29032737 - 29032701
Alignment:
Q  75 ctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    ||||||||| |||||||||||||||||||||||||||    
T  29032737 ctcagatcgagggatgagtccaatacgttagtaacca 29032701  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 8210060 - 8210013
Alignment:
Q  64 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 111  Q
    |||||| ||| ||||||||| ||||||||||||||| |||||||||||    
T  8210060 acgcgtaagaactcagatcgagggatgagtccaataagttagtaacca 8210013  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 17459206 - 17459258
Alignment:
Q  83 gtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 137  Q
    |||||||||||||||||||||||||| |  ||||||||||||| |||| ||||||    
T  17459206 gtgggatgagtccaatacgttagtaatc--acagaccctttcgggtttttgaaac 17459258  T

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Target: scaffold0756 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 4125 - 4094
Alignment:
Q  80 atcgtgggatgagtccaatacgttagtaacca 111  Q
    ||||||||||||||||||||||||||||||||    
T  4125 atcgtgggatgagtccaatacgttagtaacca 4094  T

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