View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16260_low_11 (Length: 294)
Name: NF16260_low_11
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16260_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 52911406 - 52911686
Alignment:
| Q |
1 |
tctcaattgaggtcaatttgtattttcttaagtttt-actaataaataagcaactcatagtnnnnnnnnnnntcaattactcacagtaatattttcatca |
99 |
Q |
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| T |
52911406 |
tctcaattgaggtcaatttgtattttcttaagtttttactaataaataagcaactcatagtaaaaaaaaaa-tcaattactcacagtaatattttcatca |
52911504 |
T |
|
| Q |
100 |
atagttttaatctctataaaaattaaaataaatagaggttctattgatcaaaatgctataaaacttttgagatttatagaagtgtttataaaaagtgagc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52911505 |
atagttttaatctctataaaaattaaaataaatagaggttctattgatcaaaatgctataaaacttttgagatttatagaagtgtttataaaaagtgagc |
52911604 |
T |
|
| Q |
200 |
tcaagggattctacaaattttgtcagaaaacgaaaacgtattgataaaatttaatgcatgaactcaaagaaggagcgaggaa |
281 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52911605 |
tcaagggattatacaaattttgtcagaaaacgaaaacgtattgataaaatttaatgcatgaactcaaagaaggagcgaggaa |
52911686 |
T |
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