View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16260_low_12 (Length: 242)
Name: NF16260_low_12
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16260_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 26033363 - 26033576
Alignment:
| Q |
13 |
aaaataatcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaaagtaaaagaagtaaagcatgaataagaaattacctcctcagccag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033363 |
aaaataatcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaaagtaaaagaagtaaagcatgaataagaaattacctcctcagccag |
26033462 |
T |
|
| Q |
113 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033463 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
26033562 |
T |
|
| Q |
213 |
ttataccatcttag |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26033563 |
ttataccatcttag |
26033576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 38180893 - 38180680
Alignment:
| Q |
19 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
112 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
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|
| T |
38180893 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38180794 |
T |
|
| Q |
113 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38180793 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38180694 |
T |
|
| Q |
213 |
ttataccatcttag |
226 |
Q |
| |
|
|||||||||||||| |
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|
| T |
38180693 |
ttataccatcttag |
38180680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 38190238 - 38190451
Alignment:
| Q |
19 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataaga---aattacctcctcagccag |
112 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| |
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|
| T |
38190238 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38190337 |
T |
|
| Q |
113 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38190338 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38190437 |
T |
|
| Q |
213 |
ttataccatcttag |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38190438 |
ttataccatcttag |
38190451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 38208117 - 38207904
Alignment:
| Q |
19 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
112 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
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|
| T |
38208117 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38208018 |
T |
|
| Q |
113 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38208017 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38207918 |
T |
|
| Q |
213 |
ttataccatcttag |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38207917 |
ttataccatcttag |
38207904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 38217463 - 38217676
Alignment:
| Q |
19 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataaga---aattacctcctcagccag |
112 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
38217463 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38217562 |
T |
|
| Q |
113 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38217563 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38217662 |
T |
|
| Q |
213 |
ttataccatcttag |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38217663 |
ttataccatcttag |
38217676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 38456253 - 38456040
Alignment:
| Q |
19 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
112 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
38456253 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38456154 |
T |
|
| Q |
113 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38456153 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38456054 |
T |
|
| Q |
213 |
ttataccatcttag |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38456053 |
ttataccatcttag |
38456040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 38447258 - 38447149
Alignment:
| Q |
114 |
ttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgat |
213 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| ||| ||| ||||| |||||||||||| |||||||||||||||||| ||| | ||| |||| || |
|
|
| T |
38447258 |
ttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
38447159 |
T |
|
| Q |
214 |
tataccatct |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
38447158 |
tataccatct |
38447149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 53351796 - 53351979
Alignment:
| Q |
41 |
gatagatcaatatttcaaattaaagaaagt-aaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcaccatactt |
139 |
Q |
| |
|
||||||| |||||||||||| ||| ||| ||||||||||||||||||| | ||| |||| | |||||||||||||||||||||||||||| | || |
|
|
| T |
53351796 |
gatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaa---cctcttgagccagcttagaccatttgaattcaccaaagtt |
53351892 |
T |
|
| Q |
140 |
tttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttag |
226 |
Q |
| |
|
||| ||||| ||| ||||| |||| ||||||||||||||| || ||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
53351893 |
gttaaagaaccgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttag |
53351979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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