View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16260_low_3 (Length: 477)

Name: NF16260_low_3
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16260_low_3
NF16260_low_3
[»] chr8 (17 HSPs)
chr8 (1-244)||(41806110-41806352)
chr8 (244-457)||(28644562-28644775)
chr8 (244-459)||(30410271-30410486)
chr8 (244-439)||(33071918-33072113)
chr8 (244-439)||(42234656-42234851)
chr8 (243-459)||(30405762-30405961)
chr8 (244-439)||(38757003-38757186)
chr8 (243-397)||(43807485-43807641)
chr8 (244-397)||(43812044-43812199)
chr8 (242-397)||(202202-202361)
chr8 (242-397)||(317039-317198)
chr8 (243-397)||(197684-197842)
chr8 (243-397)||(312521-312679)
chr8 (3-195)||(41800036-41800224)
chr8 (244-340)||(41945339-41945434)
chr8 (243-344)||(41949801-41949902)
chr8 (368-422)||(27435169-27435223)
[»] chr5 (22 HSPs)
chr5 (244-459)||(30695293-30695508)
chr5 (244-439)||(32485947-32486143)
chr5 (244-439)||(19502307-19502504)
chr5 (243-439)||(26336767-26336965)
chr5 (243-457)||(40367555-40367758)
chr5 (244-439)||(36632314-36632497)
chr5 (244-457)||(40371693-40371892)
chr5 (264-429)||(43384972-43385138)
chr5 (243-397)||(7099374-7099532)
chr5 (243-397)||(12023288-12023446)
chr5 (244-397)||(7103943-7104100)
chr5 (244-397)||(12018731-12018888)
chr5 (243-397)||(16798668-16798826)
chr5 (244-397)||(16794108-16794265)
chr5 (292-425)||(20830304-20830437)
chr5 (244-397)||(10274546-10274698)
chr5 (238-352)||(10277198-10277312)
chr5 (243-397)||(37682035-37682182)
chr5 (97-244)||(278541-278689)
chr5 (244-397)||(37658732-37658878)
chr5 (292-366)||(20808675-20808749)
chr5 (368-400)||(5733082-5733114)
[»] chr7 (11 HSPs)
chr7 (243-459)||(27761396-27761612)
chr7 (244-459)||(27756846-27757061)
chr7 (250-458)||(47419521-47419729)
chr7 (244-459)||(22901154-22901370)
chr7 (243-425)||(35705633-35705815)
chr7 (244-439)||(7466485-7466669)
chr7 (257-433)||(733634-733811)
chr7 (243-397)||(7940083-7940241)
chr7 (244-397)||(7944636-7944793)
chr7 (256-416)||(13828087-13828248)
chr7 (256-352)||(37355573-37355669)
[»] chr6 (13 HSPs)
chr6 (244-459)||(8319985-8320199)
chr6 (243-459)||(8315446-8315662)
chr6 (243-457)||(27552053-27552268)
chr6 (244-439)||(17096236-17096431)
chr6 (244-457)||(17779914-17780128)
chr6 (244-433)||(17895691-17895881)
chr6 (242-440)||(27574699-27574886)
chr6 (244-439)||(14531749-14531945)
chr6 (243-433)||(17886816-17887001)
chr6 (282-397)||(6440865-6440979)
chr6 (305-346)||(17163689-17163730)
chr6 (309-347)||(7888212-7888250)
chr6 (257-346)||(17159610-17159700)
[»] chr1 (7 HSPs)
chr1 (244-459)||(39793831-39794045)
chr1 (244-457)||(16588422-16588635)
chr1 (243-439)||(43591783-43591979)
chr1 (243-459)||(26316012-26316215)
chr1 (244-459)||(26311522-26311724)
chr1 (243-397)||(10504435-10504588)
chr1 (368-400)||(41879945-41879977)
[»] chr3 (19 HSPs)
chr3 (243-459)||(21847108-21847326)
chr3 (243-459)||(21850198-21850416)
chr3 (244-439)||(9105275-9105470)
chr3 (244-439)||(11004365-11004560)
chr3 (243-439)||(43547722-43547920)
chr3 (244-439)||(9697586-9697783)
chr3 (243-397)||(54171924-54172082)
chr3 (243-397)||(54167344-54167502)
chr3 (244-397)||(39399127-39399279)
chr3 (320-440)||(43554645-43554765)
chr3 (107-244)||(24685192-24685329)
chr3 (1-193)||(24631841-24632032)
chr3 (305-425)||(755891-756012)
chr3 (243-321)||(43554291-43554371)
chr3 (101-176)||(24682519-24682594)
chr3 (48-210)||(24653501-24653664)
chr3 (292-397)||(38175790-38175894)
chr3 (1-87)||(24685331-24685417)
chr3 (314-347)||(755824-755857)
[»] chr4 (18 HSPs)
chr4 (243-439)||(53722006-53722202)
chr4 (243-459)||(31670089-31670305)
chr4 (244-439)||(10317025-10317220)
chr4 (243-439)||(8892582-8892779)
chr4 (244-439)||(27186142-27186341)
chr4 (237-439)||(43683636-43683826)
chr4 (243-397)||(44151557-44151715)
chr4 (244-397)||(3770842-3770999)
chr4 (244-397)||(44147023-44147180)
chr4 (243-439)||(50627904-50628088)
chr4 (244-397)||(41884925-41885076)
chr4 (340-439)||(35842843-35842942)
chr4 (243-397)||(31359150-31359303)
chr4 (242-397)||(49274517-49274670)
chr4 (244-339)||(31354678-31354772)
chr4 (278-438)||(53785880-53786039)
chr4 (295-347)||(45976222-45976274)
chr4 (271-321)||(35842797-35842847)
[»] chr2 (12 HSPs)
chr2 (243-459)||(8055391-8055606)
chr2 (244-459)||(8050839-8051053)
chr2 (244-439)||(12999426-12999622)
chr2 (244-459)||(6463380-6463583)
chr2 (243-397)||(36670502-36670660)
chr2 (243-397)||(36675050-36675208)
chr2 (244-406)||(13270980-13271131)
chr2 (243-397)||(35950443-35950596)
chr2 (244-397)||(41093824-41093976)
chr2 (257-344)||(29767953-29768041)
chr2 (309-397)||(34590280-34590366)
chr2 (298-335)||(27403696-27403733)
[»] scaffold0440 (2 HSPs)
scaffold0440 (243-397)||(2979-3137)
scaffold0440 (243-397)||(7505-7662)
[»] scaffold0044 (2 HSPs)
scaffold0044 (243-397)||(44865-45023)
scaffold0044 (244-397)||(49445-49602)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41806352 - 41806110
Alignment:
Q  1 ggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaaagttagatgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41806352 ggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttttctctccaaagttagatgc 41806253  T
Q  101 atttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41806252 atttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaaga-gaatgttaact 41806154  T
Q  201 gtagaaagaatgtaagatgggcttctatatgcactgaagagaat 244  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  41806153 gtagaaagaatgtaagacgggcttctataagcactgaagagaat 41806110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 244 - 457
Target Start/End: Original strand, 28644562 - 28644775
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgca 28644761  T
Q  444 tgtagaattaataa 457  Q
    |||||||| |||||    
T  28644762 tgtagaatcaataa 28644775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 244 - 459
Target Start/End: Complemental strand, 30410486 - 30410271
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttata 30410287  T
Q  444 tgtagaattaataaag 459  Q
    |||||||| |||||||    
T  30410286 tgtagaatcaataaag 30410271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  33071918 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgtt 33072017  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
     |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  33072018 ggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 42234851 - 42234656
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 243 - 459
Target Start/End: Complemental strand, 30405961 - 30405762
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||                 ||||||||||||||||||||||||||||||||||||    
T  30405961 atgttagtttgttttaattcaagtttagtttagtgataatcacattc-----------------tgttttagtttgttatgaagtttgttacaagtttgt 30405879  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 442  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  30405878 tagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttat 30405779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 38757003 - 38757186
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 38757090  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38757091 agaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 43807641 - 43807485
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  43807641 atgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 43807542  T
Q  343 tagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43807541 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  344 agaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 242 - 397
Target Start/End: Complemental strand, 202361 - 202202
Alignment:
Q  242 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 339  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  202361 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 202262  T
Q  340 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  202261 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 242 - 397
Target Start/End: Complemental strand, 317198 - 317039
Alignment:
Q  242 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 339  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  317198 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 317099  T
Q  340 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  317098 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 197842 - 197684
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  197842 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 197743  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  197742 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 312679 - 312521
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  312679 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 312580  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  312579 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 41800224 - 41800036
Alignment:
Q  3 aaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaaagttagatgcat 102  Q
    |||||||||||||| ||  || ||||| || ||||||||||||| ||||||||||||||    |||||| ||||||||   |||||||||| |  |||||    
T  41800224 aaaaagatgtaggagctcaaacgaggtagaaaaacacaagccgtgaatcttctaaatat----cttacttctgttttttattctccaaagtgatgtgcat 41800129  T
Q  103 ttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgt 195  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||| |||||||    
T  41800128 ttccttttcctgcacagtttatggtttgtgtttgattttgttagattctcctggttatttgattttataggtcccgaagaacaaggggaatgt 41800036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 243 - 344
Target Start/End: Original strand, 41949801 - 41949902
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| || ||||| ||| | |||||||||||||| |||||||||||||||||| ||    
T  41949801 atgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggt 41949900  T
Q  343 ta 344  Q
    ||    
T  41949901 ta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  368 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagcta 422  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 244 - 459
Target Start/End: Original strand, 30695293 - 30695508
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgta 30695492  T
Q  444 tgtagaattaataaag 459  Q
    |||||||| |||||||    
T  30695493 tgtagaatcaataaag 30695508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 32486143 - 32485947
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| || |||||    
T  32486043 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaatt-acattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttg 19502406  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19502407 ttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 243 - 439
Target Start/End: Complemental strand, 26336965 - 26336767
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||  || ||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  26336965 atgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgttt 26336866  T
Q  341 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26336865 gttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 243 - 457
Target Start/End: Complemental strand, 40367758 - 40367555
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||            |||||||||    
T  40367758 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgt 40367671  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagatattgtatataagctacctcctttgtacatttttg 441  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||      
T  40367670 tagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttca 40367571  T
Q  442 tatgtagaattaataa 457  Q
    |||||||||| |||||    
T  40367570 tatgtagaatcaataa 40367555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 36632314 - 36632497
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| ||||||||||||            |||||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgtt 36632401  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36632402 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 244 - 457
Target Start/End: Complemental strand, 40371892 - 40371693
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    ||||| |||||||||||||||||||||| |||||||| |||||              | |||||||||||||||||||||||||||||||||||||  ||    
T  40371792 agaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcata 40371707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 43384972 - 43385138
Alignment:
Q  264 agtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc 363  Q
    ||||||||||||||||||||| ||| | |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  364 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 429  Q
    ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 7099532 - 7099374
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7099532 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7099433  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7099432 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 12023288 - 12023446
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  12023288 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 12023387  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023388 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 16798668 - 16798826
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  16798668 atgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 16798767  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16798768 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 16794108 - 16794265
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 292 - 425
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  292 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 391  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  392 agcaacttagctagatattgtatataagctacct 425  Q
    ||||||||| ||||| ||||||||||||||||||    
T  20830337 agcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 10274546 - 10274698
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||| ||||   ||||| | ||| ||||||||  | |||||| |||||||||||    
T  10274646 agagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 10277198 - 10277312
Alignment:
Q  238 agagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaag 337  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| |||||||||||    
T  10277198 agaggatgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaag 10277297  T
Q  338 tttgttagaggttag 352  Q
    || ||||||| ||||    
T  10277298 ttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 37682035 - 37682182
Alignment:
Q  243 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattac-attttgttttagtttgttatgaagtttgttacaagttt 340  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || | |||||||||||||||||||           ||||||    
T  37682035 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagttt 37682123  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  37682124 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 278541 - 278689
Alignment:
Q  97 atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgt 195  Q
    ||||||||||||||||  ||  ||||||||||||  ||| |||||| ||| ||||||||||| ||||||| |||||||||||   |||||||||||||||    
T  278541 atgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgt 278640  T
Q  196 taactgtagaaagaatgtaagatgggcttctatatgcactgaagagaat 244  Q
    ||| ||||| ||||   | || || ||||||||| ||||||||||||||    
T  278641 taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaat 278689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 37658732 - 37658878
Alignment:
Q  244 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattac-attttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| || | |||||||||| ||||||||           |||||||    
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttg 37658820  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  37658821 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  292 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctag 366  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  368 gtttgttacattgcttgtgcttcaagcaactta 400  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 243 - 459
Target Start/End: Original strand, 27761396 - 27761612
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  27761396 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 27761495  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 442  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27761496 tagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttat 27761595  T
Q  443 atgtagaattaataaag 459  Q
    ||||||||| |||||||    
T  27761596 atgtagaatcaataaag 27761612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 244 - 459
Target Start/End: Original strand, 27756846 - 27757061
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  27756846 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgtt 27756945  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27756946 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttata 27757045  T
Q  444 tgtagaattaataaag 459  Q
    |||||||| |||||||    
T  27757046 tgtagaatcaataaag 27757061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 250 - 458
Target Start/End: Complemental strand, 47419729 - 47419521
Alignment:
Q  250 tttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggt 349  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  350 tagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtaga 449  Q
    ||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtaga 47419530  T
Q  450 attaataaa 458  Q
    || ||||||    
T  47419529 atcaataaa 47419521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 244 - 459
Target Start/End: Original strand, 22901154 - 22901370
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 441  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 22901352  T
Q  442 tatgtagaattaataaag 459  Q
    |||||||||| |||||||    
T  22901353 tatgtagaatcaataaag 22901370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 243 - 425
Target Start/End: Original strand, 35705633 - 35705815
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgtt-atgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  35705633 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttg 35705732  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacct 425  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  35705733 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacct 35705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 7466669 - 7466485
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||            |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgt 7466582  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7466581 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 257 - 433
Target Start/End: Complemental strand, 733811 - 733634
Alignment:
Q  257 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtag 355  Q
    |||||||||||||| |||||||||||||   | || |||||||| |||| ||   ||||||||||||||| |||||||||| ||||||||||||||| |     
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  356 ataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 433  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgta 733634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 7940241 - 7940083
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7940241 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7940142  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7940141 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 7944793 - 7944636
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 13828248 - 13828087
Alignment:
Q  256 ttaattcaagtttagtttagtgataatcacaatcaat-ggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagta 354  Q
    ||||||||||||||  |||||||||||||   | | | ||||||| |||||||  ||| ||||||| ||||||||||||||||||||||||||  ||       
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  355 gataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat 416  Q
     |||| |  ||| || |||||||||||||||||||||||| || || ||||||| |||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 37355573 - 37355669
Alignment:
Q  256 ttaattcaagtttagtttagtgataatcacaatcaatggttaattacatt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 352  Q
    ||||||||||||||  | ||||||||||||| | | |||||||| | ||| ||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattag 37355669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 244 - 459
Target Start/End: Complemental strand, 8320199 - 8319985
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  8320199 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgtt 8320100  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  8320099 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct-ta 8320001  T
Q  444 tgtagaattaataaag 459  Q
    |||||||| |||||||    
T  8320000 tgtagaatcaataaag 8319985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 243 - 459
Target Start/End: Complemental strand, 8315662 - 8315446
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  8315662 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttca 8315464  T
Q  442 tatgtagaattaataaag 459  Q
    |||||||||| |||||||    
T  8315463 tatgtagaatcaataaag 8315446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 243 - 457
Target Start/End: Complemental strand, 27552268 - 27552053
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  27552268 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgt 27552169  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-g 441  Q
    || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27552168 taaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcg 27552069  T
Q  442 tatgtagaattaataa 457  Q
    |||| ||||| |||||    
T  27552068 tatggagaatcaataa 27552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 17096431 - 17096236
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 244 - 457
Target Start/End: Original strand, 17779914 - 17780128
Alignment:
Q  244 tgttagtttgtttt-aattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 442  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  17780014 tagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgt 17780113  T
Q  443 atgtagaattaataa 457  Q
    ||||||||| |||||    
T  17780114 atgtagaatcaataa 17780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 244 - 433
Target Start/End: Complemental strand, 17895881 - 17895691
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgt 17895782  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 433  Q
    |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17895781 tagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgta 17895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 242 - 440
Target Start/End: Complemental strand, 27574886 - 27574699
Alignment:
Q  242 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||            
T  27574886 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta-------- 27574795  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 440  Q
       |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27574794 ---gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacattttt 27574699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 14531945 - 14531749
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  14531845 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 243 - 433
Target Start/End: Complemental strand, 17887001 - 17886816
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| ||||       |||||||    
T  17887001 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttg 17886908  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 433  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17886907 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgta 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 397
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  282 tcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgc 381  Q
    ||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  382 ttgtgcttcaagcaac 397  Q
    |||| |||||||||||    
T  6440880 ttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  305 tttgttttagtttgttatgaagtttgttacaagtttgttaga 346  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  309 ttttagtttgttatgaagtttgttacaagtttgttagag 347  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 17159610 - 17159700
Alignment:
Q  257 taattcaagtttagtttagtgataatcacaatcaatgg-ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttaga 346  Q
    |||||||||||||| |||||||||||||  || | | | || || | | |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 244 - 459
Target Start/End: Original strand, 39793831 - 39794045
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  39793831 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgtt 39793930  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39793931 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcata 39794029  T
Q  444 tgtagaattaataaag 459  Q
    |||||||| |||||||    
T  39794030 tgtagaatcaataaag 39794045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 244 - 457
Target Start/End: Complemental strand, 16588635 - 16588422
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    ||||||||  | ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  16588535 agaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgta 16588436  T
Q  444 tgtagaattaataa 457  Q
    || ||||| |||||    
T  16588435 tggagaatcaataa 16588422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 243 - 439
Target Start/End: Complemental strand, 43591979 - 43591783
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||  || ||| ||||||||||||||||||||||||||||  ||||    
T  43591979 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgt 43591880  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43591879 tagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 243 - 459
Target Start/End: Original strand, 26316012 - 26316215
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||    
T  26316012 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgt 26316099  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||    
T  26316100 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgt 26316198  T
Q  443 atgtagaattaataaag 459  Q
    ||| ||||| |||||||    
T  26316199 atgcagaatcaataaag 26316215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 244 - 459
Target Start/End: Original strand, 26311522 - 26311724
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26311609  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||    
T  26311610 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgta 26311708  T
Q  444 tgtagaattaataaag 459  Q
    || ||||| |||||||    
T  26311709 tgcagaatcaataaag 26311724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 10504435 - 10504588
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  10504435 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagt 10504534  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  10504535 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  368 gtttgttacattgcttgtgcttcaagcaactta 400  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 243 - 459
Target Start/End: Original strand, 21847108 - 21847326
Alignment:
Q  243 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21847108 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  341 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 440  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T
Q  441 gtatgtagaattaataaag 459  Q
    |||| |||||| |||||||    
T  21847308 gtatatagaatcaataaag 21847326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 243 - 459
Target Start/End: Original strand, 21850198 - 21850416
Alignment:
Q  243 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21850198 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  341 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 440  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T
Q  441 gtatgtagaattaataaag 459  Q
    |||| |||||| |||||||    
T  21850398 gtatatagaatcaataaag 21850416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 9105275 - 9105470
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 11004560 - 11004365
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 243 - 439
Target Start/End: Original strand, 43547722 - 43547920
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 340  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43547722 atgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagttt 43547821  T
Q  341 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  43547822 gttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 9697586 - 9697783
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 54172082 - 54171924
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54172082 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54171983  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  54171982 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 54167502 - 54167344
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54167502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54167403  T
Q  341 gttagaggttagtagataa--gatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||  | ||||  |   ||||||||||||||||||||||||||||||||||    
T  54167402 gttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 39399279 - 39399127
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  39399279 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 39399180  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39399179 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 320 - 440
Target Start/End: Original strand, 43554645 - 43554765
Alignment:
Q  320 tatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataag 419  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||| || ||||||||||||||  ||| ||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  420 ctacctcctttgtacattttt 440  Q
    ||||||| |||||| ||||||    
T  43554745 ctacctcttttgtatattttt 43554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 24685329 - 24685192
Alignment:
Q  107 ttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaa 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||   |||||||||||||||||| || |  |    
T  24685329 ttttcctgcacagtttatggtttgtgtttgattttgtgagattcttctggttatttgattttataggtccccaagaacaagaggaatgttaaatgcatga 24685230  T
Q  207 agaatgtaagatgggcttctatatgcactgaagagaat 244  Q
    ||||| | ||||| | || |||| |||| |||||||||    
T  24685229 agaatatgagatgtggttttataagcacagaagagaat 24685192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 24632032 - 24631841
Alignment:
Q  1 ggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaaagttagatgc 100  Q
    ||||||||||  |||| |||||||||||| |||| | |||||||  |||||||||||||||||||||||||| ||||| | ||||| | |||| | |||     
T  24632032 ggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttactaatgtttct-tctcttccaagtgatatgg 24631934  T
Q  101 atttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaat 193  Q
    ||||| ||||||  || | |||||||| ||| || |||||||||||||| |||  |||||||||||||||  |||||   |||||||||||||    
T  24631933 atttctttttccaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattagtcccaaagaacaagaggaat 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 305 - 425
Target Start/End: Original strand, 755891 - 756012
Alignment:
Q  305 tttgttttagtttgttatgaagtttgttacaagtttgttagag-gttagtagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttagc 402  Q
    |||||||||||||||| |||||||||||||||||||||||||| || | || |||| |   ||| ||||||||||||||||||||||||||| || || |    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaacta-ataaaaggttagggtttgttacattgcttgtgcttcaagctacctaac 755989  T
Q  403 tagatattgtatataagctacct 425  Q
    |||||  ||||||||||||||||    
T  755990 tagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 43554291 - 43554371
Alignment:
Q  243 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattacattttg-ttttagtttgtta 321  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| | |||||||| |||||||||||||    
T  43554291 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 24682594 - 24682519
Alignment:
Q  101 atttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcc 176  Q
    |||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24682594 atttacttttcctgcacagtttattgtttgcgtttgattttatgagattctcctggttctttgattttataggtcc 24682519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 24653664 - 24653501
Alignment:
Q  48 aatcttctaaatatttcacttactactgtttttctctctccaaagttagatgcatttcctttt--cctgcaaagtttatggtttgtgtttgattttgtg- 144  Q
    |||||||||||||||||||||||||||||||  || | |||| | | | |||||||| |||||  |||||| ||||||| || ||||||||||||| ||     
T  24653664 aatcttctaaatatttcacttactactgttt--ctttttccata-tgatatgcatttacttttttcctgcacagtttattgtgtgtgtttgattttatgc 24653568  T
Q  145 -agattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaa 210  Q
     |||||||||| ||| |||||||||||||||||    |||  ||||||||||||| ||||| |||||    
T  24653567 gagattctcctggttctttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaa 24653501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 397
Target Start/End: Complemental strand, 38175894 - 38175790
Alignment:
Q  292 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 391  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||   ||||||| ||| ||||||||| | |||||| |||||    
T  38175894 tggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttca 38175796  T
Q  392 agcaac 397  Q
    ||||||    
T  38175795 agcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24685417 - 24685331
Alignment:
Q  1 ggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctc 87  Q
    |||||||||  ||||| || || |||||| |||||||| ||||||  |||||||||||| || ||||||| ||||||||||||||||    
T  24685417 ggaaaaagacctaggagctcgactgaggtagacaaacaaaagccgcgaatcttctaaatgttgcacttaccactgtttttctctctc 24685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  314 gtttgttatgaagtttgttacaagtttgttagag 347  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 243 - 439
Target Start/End: Original strand, 53722006 - 53722202
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53722006 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 53722105  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53722106 tagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 243 - 459
Target Start/End: Original strand, 31670089 - 31670305
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31670089 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 441  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 31670287  T
Q  442 tatgtagaattaataaag 459  Q
     ||||||||| |||||||    
T  31670288 aatgtagaatcaataaag 31670305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 10317220 - 10317025
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 243 - 439
Target Start/End: Complemental strand, 8892779 - 8892582
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  8892779 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||| |||| | ||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 27186142 - 27186341
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt--agttt-gttatgaagtttgttacaagtt 339  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||  ||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  340 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 237 - 439
Target Start/End: Complemental strand, 43683826 - 43683636
Alignment:
Q  237 aagagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaa 336  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||       
T  43683826 aagacaatgttagtt-gttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta--- 43683731  T
Q  337 gtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacat 436  Q
            |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  43683730 --------gaggttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatat 43683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 44151557 - 44151715
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  44151557 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44151656  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44151657 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 3770842 - 3770999
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 44147023 - 44147180
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 243 - 439
Target Start/End: Complemental strand, 50628088 - 50627904
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||| || |||| |||||||||||||            ||||||||    
T  50628088 atgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttg 50628002  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  50628001 ttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 41884925 - 41885076
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 41885023  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||| ||||   ||||||| ||| ||||||||| | |||||| |||||||||||    
T  41885024 agagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 340 - 439
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  340 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 31359150 - 31359303
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||| | || |||||| |||||| ||||||||||||| ||    
T  31359150 atgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagt 31359249  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  31359250 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 242 - 397
Target Start/End: Complemental strand, 49274670 - 49274517
Alignment:
Q  242 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |    
T  49274670 aatgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttag 49274572  T
Q  342 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  49274571 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 31354678 - 31354772
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtt 339  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| | |||||||| |||||| | || || |||||||||| |||||||||||||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 438
Target Start/End: Original strand, 53785880 - 53786039
Alignment:
Q  278 ataatcacaatcaatggttaattacattt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgtta 375  Q
    ||||||||| ||| |||||||| ||||||  |||||| |||||||| ||| ||||||||||||||||||||   |||   |||   | ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgtta 53785977  T
Q  376 cattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 438  Q
    ||| |||||||||||||||||| || |||| | | ||||||||||||||| ||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacct-ctttgtacattt 53786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 45976274 - 45976222
Alignment:
Q  295 ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagag 347  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976274 ttaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  271 tttagtgataatcacaatcaatggttaattacattttgttttagtttgtta 321  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 243 - 459
Target Start/End: Original strand, 8055391 - 8055606
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||    
T  8055391 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgt 8055490  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  8055491 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcat 8055589  T
Q  443 atgtagaattaataaag 459  Q
    ||||||||| |||||||    
T  8055590 atgtagaatcaataaag 8055606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 244 - 459
Target Start/End: Original strand, 8050839 - 8051053
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  8050839 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgtt 8050938  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||    
T  8050939 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtaca-tttcata 8051037  T
Q  444 tgtagaattaataaag 459  Q
    |||||||| |||||||    
T  8051038 tgtagaatcaataaag 8051053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 12999622 - 12999426
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 439  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12999522 tagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 244 - 459
Target Start/End: Complemental strand, 6463583 - 6463380
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||            ||||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgtt 6463496  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 443  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6463495 agaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagta 6463396  T
Q  444 tgtagaattaataaag 459  Q
    |||||||| |||||||    
T  6463395 tgtagaatcaataaag 6463380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 36670502 - 36670660
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36670502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36670601  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36670602 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 36675050 - 36675208
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36675050 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36675149  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36675150 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 244 - 406
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||||            ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgt 13271044  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 406  Q
    |||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271043 tagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 35950596 - 35950443
Alignment:
Q  243 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  35950596 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagt 35950497  T
Q  343 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||| ||||    |||| | ||| ||||||||| | |||||| |||||||||||    
T  35950496 tagagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 41093824 - 41093976
Alignment:
Q  244 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 343  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| | || ||||| | |||| | || ||||||||||||| |||||||||| || |||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  344 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093924 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  257 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtta 344  Q
    ||||||||||||||||||||||||||||  || || || || || ||| |||||||||||||||| | |||||||||||||||| ||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 397
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  309 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 27403733 - 27403696
Alignment:
Q  298 attacattttgttttagtttgttatgaagtttgttaca 335  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27403733 attacactttgttttagtttgttttgaagtttgttaca 27403696  T

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Target: scaffold0440 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 2979 - 3137
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  2979 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 3078  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3079 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

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Target: scaffold0440; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 7505 - 7662
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  7505 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||| ||||||||||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

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Target: scaffold0044 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 45023 - 44865
Alignment:
Q  243 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  45023 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44924  T
Q  341 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44923 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

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Target: scaffold0044; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 49602 - 49445
Alignment:
Q  244 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  342 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 397  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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