View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16260_low_4 (Length: 467)

Name: NF16260_low_4
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16260_low_4
NF16260_low_4
[»] chr4 (13 HSPs)
chr4 (17-235)||(52986840-52987057)
chr4 (339-458)||(52986621-52986736)
chr4 (157-235)||(55659810-55659888)
chr4 (341-446)||(54626843-54626946)
chr4 (165-235)||(54862634-54862704)
chr4 (153-234)||(55634843-55634924)
chr4 (341-446)||(54862405-54862508)
chr4 (341-410)||(51315717-51315786)
chr4 (153-207)||(50192566-50192620)
chr4 (339-430)||(55635043-55635132)
chr4 (357-410)||(50192334-50192387)
chr4 (360-408)||(3672106-3672154)
chr4 (153-208)||(54626642-54626697)
[»] chr3 (1 HSPs)
chr3 (153-234)||(16437813-16437894)
[»] chr2 (2 HSPs)
chr2 (148-235)||(13401034-13401121)
chr2 (341-408)||(13401227-13401294)
[»] chr8 (2 HSPs)
chr8 (360-408)||(9889346-9889394)
chr8 (168-230)||(9889162-9889224)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 52987057 - 52986840
Alignment:
Q  17 agcaactaagcaaattcggaggcttctttcaaccagtaactgttgattttctcatgtttttaatgcattacattactactatgttgctttcattctaact 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52987057 agcaactaagcaaattcggaggcttctttcaac-agtaactgttgattttctcatgtttttaatgcattacattactactatgttgctttcattctaact 52986959  T
Q  117 gttaaagcgtttgatgtttgtgtgtagaaaaaagctctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttaggga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52986958 gttaaagcgtttgatgtttgtgtgtagaaaaaagctctccgattgagcaagttattcaatctgctgttgttcctcgttttgttgagtttctatttaggga 52986859  T
Q  217 cgatttacctcaacttcag 235  Q
    |||||||||||||||||||    
T  52986858 cgatttacctcaacttcag 52986840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 339 - 458
Target Start/End: Complemental strand, 52986736 - 52986621
Alignment:
Q  339 aagctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaatctactc 438  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        
T  52986736 aagctacttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaagct---- 52986641  T
Q  439 agttcacctcatgatgatgt 458  Q
    ||||||||||||||||||||    
T  52986640 agttcacctcatgatgatgt 52986621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 55659888 - 55659810
Alignment:
Q  157 gattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 235  Q
    |||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  55659888 gattgatcatgttattcaatctggcgttgttcctcgttttgttgaatttctatttagggacgattttcctcaacttcag 55659810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 446
Target Start/End: Original strand, 54626843 - 54626946
Alignment:
Q  341 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaatctactcag 440  Q
    ||||||| ||||||  ||||||||| ||||||||||||| ||||||||||||||||| |||||||||  | |||||||||||||||||||| || || ||    
T  54626843 gctgcttgggcactcacaaacatagcagctggaacttctgagaacactaaggtggtagttgatcatg--gcgcagtaccaatgtttgtcaagcttcttag 54626940  T
Q  441 ttcacc 446  Q
    ||||||    
T  54626941 ttcacc 54626946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 54862704 - 54862634
Alignment:
Q  165 aagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 235  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||| ||||||||||||    
T  54862704 aagttattcaatctggtgttgttcctcgttttgttcaatttctatatagggaggattttcctcaacttcag 54862634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 55634843 - 55634924
Alignment:
Q  153 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttca 234  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||| |||| ||||||    
T  55634843 ctccgattgaccaagttattcaatctggtgttgtttctcgttttgttcaatttctattaagggacaattttcctcgacttca 55634924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 446
Target Start/End: Complemental strand, 54862508 - 54862405
Alignment:
Q  341 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaatctactcag 440  Q
    ||||||| ||||||  ||||||||| | ||||||||||  |||||||||||||||||||||||||||  | ||||||||||| ||| |||| ||||| ||    
T  54862508 gctgcttgggcactcacaaacatagcatctggaacttcggagaacactaaggtggtaattgatcatg--gggcagtaccaatatttatcaagctacttag 54862411  T
Q  441 ttcacc 446  Q
    ||||||    
T  54862410 ttcacc 54862405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 51315717 - 51315786
Alignment:
Q  341 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggag 410  Q
    |||||||  |||||| ||||||||| ||||||||||||| ||||||||||| || |||||||||||||||    
T  51315717 gctgctttcgcacttacaaacatagcagctggaacttctgagaacactaagttgctaattgatcatggag 51315786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 50192620 - 50192566
Alignment:
Q  153 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttct 207  Q
    ||||||||||| | |||||||||||||||||||| || |||||||||||||||||    
T  50192620 ctccgattgaggaggttattcaatctggtgttgtgccacgttttgttgagtttct 50192566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 55635043 - 55635132
Alignment:
Q  339 aagctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtca 430  Q
    ||||||||| ||||||  ||||||||| | | ||||||||| |||||| |||||||||||||||||| || || || |||||||||||||||    
T  55635043 aagctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgg-ga-caataccaatgtttgtca 55635132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 50192387 - 50192334
Alignment:
Q  357 caaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggag 410  Q
    ||||||||| | ||||||||||| |||||||||||||||| |||||||| ||||    
T  50192387 caaacatagcatctggaacttctgagaacactaaggtggtgattgatcacggag 50192334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 3672154 - 3672106
Alignment:
Q  360 acatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 408  Q
    |||||| || |||||||||| ||||||||||||| ||||||||||||||    
T  3672154 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatgg 3672106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 54626642 - 54626697
Alignment:
Q  153 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttcta 208  Q
    ||||||||||  | ||||||||||||||||||||||| ||||||||| | ||||||    
T  54626642 ctccgattgatgatgttattcaatctggtgttgttccccgttttgttcaatttcta 54626697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 16437813 - 16437894
Alignment:
Q  153 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttca 234  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||| |||| ||||||    
T  16437813 ctccgattgaccaagttattcaatctggtgttgtttctcgttttgttcaatttctattaagggacaattttcctcgacttca 16437894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 13401034 - 13401121
Alignment:
Q  148 aagctctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 235  Q
    |||| ||||||||||| ||||||||||||||||||||||||| || |||||| |||||||| || |||| ||||| || |||||||||    
T  13401034 aagccctccgattgaggaagttattcaatctggtgttgttccccgctttgttcagtttctagttcgggaggattttccccaacttcag 13401121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 13401227 - 13401294
Alignment:
Q  341 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 408  Q
    ||||||| ||| ||| ||||||||| | | ||||||||| |||| |||||||||||||||||||||||    
T  13401227 gctgcttgggctcttacaaacatagcatccggaacttctgagaatactaaggtggtaattgatcatgg 13401294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 9889346 - 9889394
Alignment:
Q  360 acatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 408  Q
    |||||| || |||||||||| ||||||||||||| ||||||||||||||    
T  9889346 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatgg 9889394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 9889162 - 9889224
Alignment:
Q  168 ttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaac 230  Q
    |||||||||||| || |||||||||| ||||||| |||||| |||  |||||||| |||||||    
T  9889162 ttattcaatctgatgctgttcctcgtcttgttgaatttctagttattgacgattttcctcaac 9889224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University