View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16260_low_5 (Length: 442)

Name: NF16260_low_5
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16260_low_5
NF16260_low_5
[»] chr3 (11 HSPs)
chr3 (10-211)||(1077748-1077948)
chr3 (10-211)||(1050844-1051045)
chr3 (10-209)||(1091628-1091827)
chr3 (10-209)||(1107990-1108189)
chr3 (314-409)||(28784674-28784767)
chr3 (314-409)||(48707585-48707678)
chr3 (347-409)||(48023921-48023983)
chr3 (314-373)||(5353449-5353506)
chr3 (365-409)||(5354551-5354595)
chr3 (212-247)||(5353345-5353380)
chr3 (212-247)||(28784835-28784870)
[»] chr8 (4 HSPs)
chr8 (314-409)||(44734313-44734406)
chr8 (319-409)||(44732002-44732090)
chr8 (212-247)||(44732164-44732199)
chr8 (212-247)||(44734477-44734512)
[»] chr5 (4 HSPs)
chr5 (314-409)||(32798167-32798260)
chr5 (314-409)||(32800479-32800572)
chr5 (209-247)||(32798327-32798365)
chr5 (212-247)||(32800639-32800674)
[»] chr2 (8 HSPs)
chr2 (314-409)||(45336420-45336513)
chr2 (314-409)||(45338732-45338825)
chr2 (348-409)||(1454088-1454149)
chr2 (348-408)||(14662493-14662553)
chr2 (314-409)||(17649032-17649125)
chr2 (354-410)||(132826-132882)
chr2 (212-247)||(45336580-45336615)
chr2 (212-247)||(45338892-45338927)
[»] chr1 (4 HSPs)
chr1 (314-408)||(9535417-9535509)
chr1 (314-409)||(1550317-1550411)
chr1 (347-393)||(47695723-47695769)
chr1 (212-247)||(1550478-1550513)
[»] chr4 (3 HSPs)
chr4 (315-410)||(22804771-22804864)
chr4 (212-247)||(22804932-22804967)
chr4 (348-408)||(7230887-7230946)
[»] chr7 (2 HSPs)
chr7 (314-411)||(13108714-13108808)
chr7 (314-409)||(13111006-13111099)
[»] chr6 (1 HSPs)
chr6 (348-411)||(6723624-6723687)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 1077948 - 1077748
Alignment:
Q  10 cattcgtcaacatcgcaagcacatatgtcatatttggtctatcatttggatgaagttgtagacataaaagaccaacttgtatgcatcttaaagcttcaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1077948 cattcgtcaacatcgcaagcacatatgtcatatttggtctatcatttggatgaagttgtagacataaaagaccaacttgtatgcatcttaaagcttcaga 1077849  T
Q  110 tggaatatatgagtcctttagacaatcatcaatcaattcttttgaatttccttctttccataacctccaagcctacaaaaattcaaatagttgttatata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  1077848 tggaatatatgagtcctttagacaatcatcaatcaattcttttgaatttccctctttccataacctccaagcctac-aaaattcaaatagttgttatata 1077750  T
Q  210 cc 211  Q
    ||    
T  1077749 cc 1077748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 1051045 - 1050844
Alignment:
Q  10 cattcgtcaacatcgcaagcacatatgtcatatttggtctatcatttggatgaagttgtagacataaaagaccaacttgtatgcatcttaaagcttcaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1051045 cattcgtcaacatcgcaagcacatatgtcatatttggtctatcatttggatgaagttgtagacataaaagaccaacttgtatggatcttaaagcttcaga 1050946  T
Q  110 tggaatatatgagtcctttagacaatcatcaatcaattcttttgaatttccttctttccataacctccaagcctacaaaaattcaaatagttgttatata 209  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  1050945 tggaatatatgagtcctttagacaatcatcaattaattcttctgaatttccctctttccataacctccaagcctacaaaaattcaaatagttgtcatata 1050846  T
Q  210 cc 211  Q
    ||    
T  1050845 cc 1050844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 1091827 - 1091628
Alignment:
Q  10 cattcgtcaacatcgcaagcacatatgtcatatttggtctatcatttggatgaagttgtagacataaaagaccaacttgtatgcatcttaaagcttcaga 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1091827 catttgtcaacatcgcaagcacatatgtcatatttggtctatcatttggatgaagttgtagacataaaagaccaacttgtatgcatcttaaagcttcaga 1091728  T
Q  110 tggaatatatgagtcctttagacaatcatcaatcaattcttttgaatttccttctttccataacctccaagcctacaaaaattcaaatagttgttatata 209  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  1091727 tggaatatatgagtcccttagacaatcatcaatcaattcttccgaatttccctctttccataacctccaagcctacaaaaataaaaatagttgtcatata 1091628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 1108189 - 1107990
Alignment:
Q  10 cattcgtcaacatcgcaagcacatatgtcatatttggtctatcatttggatgaagttgtagacataaaagaccaacttgtatgcatcttaaagcttcaga 109  Q
    ||||||||||||||||||||||  |   |||||| || || |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||    
T  1108189 cattcgtcaacatcgcaagcactgaaaccatattaggcctgtcatttggatgatgttgtagacataaaagaccaacttgtatgcaacgtaaagcttcaga 1108090  T
Q  110 tggaatatatgagtcctttagacaatcatcaatcaattcttttgaatttccttctttccataacctccaagcctacaaaaattcaaatagttgttatata 209  Q
    | |||| |||||||||   | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |  |||||||||    
T  1108089 tagaatgtatgagtccccgaaacaatcctcaatcaattcttttgagtttccttctttccacaacctccaagcctacaaaaatacaaacaactgttatata 1107990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 28784767 - 28784674
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  28784767 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagaatcaagccataag 28784674  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 314 - 409
Target Start/End: Original strand, 48707585 - 48707678
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  48707585 caacaatattttgtgaacaaagtactaaaagct--aagatactttgatacgttaaatttaagcatacactacaaatatatagagtcaagccataag 48707678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 48023921 - 48023983
Alignment:
Q  347 ttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  48023921 ttaagatacttttatacattaaactgaagcatacactacaaatatatagagtcaagccataag 48023983  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 5353449 - 5353506
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaactta 373  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5353449 caacaatgttttgtgaacaaagtactaaaagc--taagatactttgatacattaaactta 5353506  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 5354551 - 5354595
Alignment:
Q  365 ttaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5354551 ttaaacttaagcatacactacaaatatatagagccaagccataag 5354595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 5353345 - 5353380
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5353345 gttagcttttgcaaaggcagcagaagcaataagctc 5353380  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 28784870 - 28784835
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28784870 gttagcttttgcaaaggcagcagaagcaataagctc 28784835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 44734406 - 44734313
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44734406 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataag 44734313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 44732090 - 44732002
Alignment:
Q  319 atgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44732090 atgttttgtgaaaaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataag 44732002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 44732199 - 44732164
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44732199 gttagcttttgcaaaggcagcagaagcaataagctc 44732164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 44734512 - 44734477
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44734512 gttagcttttgcaaaggcagcagaagcaataagctc 44734477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 32798260 - 32798167
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32798260 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 32798167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 32800572 - 32800479
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32800572 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 32800479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 32798365 - 32798327
Alignment:
Q  209 accgttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  32798365 accgttagcttttgcaaaggcagcagaagcaataagctc 32798327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 32800674 - 32800639
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32800674 gttagcttttgcaaaggcagcagaagcaataagctc 32800639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 45336513 - 45336420
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45336513 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 45336420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 45338825 - 45338732
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45338825 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 45338732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 1454149 - 1454088
Alignment:
Q  348 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1454149 taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataag 1454088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 14662553 - 14662493
Alignment:
Q  348 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataa 408  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14662553 taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataa 14662493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 17649125 - 17649032
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    ||||||||||||||||||||||||  |||| ||  |||||||||||||||||| | || |||||||||  ||||||||||||||||||||||||||    
T  17649125 caacaatgttttgtgaacaaagtaaaaaaaact--aagatactttgatacatttagctgaagcatacataacaaatatatagagccaagccataag 17649032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 132882 - 132826
Alignment:
Q  354 actttgatacattaaacttaagcatacactacaaatatatagagccaagccataagt 410  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  132882 actttaatacatcaaactgaagcatacactacaaatatatagaggcaagccataagt 132826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 45336615 - 45336580
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  45336615 gttagcttttgcaaaggcagcagaagcaataagctc 45336580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 45338927 - 45338892
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  45338927 gttagcttttgcaaaggcagcagaagcaataagctc 45338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 9535509 - 9535417
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataa 408  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9535509 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaaacatacactacaaatatatagagtcaagccataa 9535417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 1550411 - 1550317
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaa-gctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1550411 caacaatgttttgtgaacaaagtactaaaaagct--aagatactttgatacattaaacttaagcatacattacaaatatatagagccaagccataag 1550317  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 47695723 - 47695769
Alignment:
Q  347 ttaagatactttgatacattaaacttaagcatacactacaaatatat 393  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||    
T  47695723 ttaagataatttgatacattaaactaaagcatacactgcaaatatat 47695769  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 1550513 - 1550478
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1550513 gttagcttttgcaaaggcagcagaagcaataagctc 1550478  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 315 - 410
Target Start/End: Complemental strand, 22804864 - 22804771
Alignment:
Q  315 aacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagt 410  Q
    |||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22804864 aacaatattttgtgaaaaaagtactaaaag--ttaagatactttgatacattaaacttaaacatacactacaaatatatagagccaagccataagt 22804771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 22804967 - 22804932
Alignment:
Q  212 gttagcttttgcaaaggcagcagaatcaataagctc 247  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22804967 gttagcttttgcaaaggcagcagaagcaataagctc 22804932  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 7230887 - 7230946
Alignment:
Q  348 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataa 408  Q
    ||||||||||||| |||||||  | |||||||||  ||||| |||||||||||||||||||    
T  7230887 taagatactttgacacattaagttaaagcatacataacaaa-atatagagccaagccataa 7230946  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 314 - 411
Target Start/End: Original strand, 13108714 - 13108808
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagtt 411  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  13108714 caacaatgttttgtgaacaaagtaa-aaaagct--aagatactttgatacattaaactgaagcatacactacaaatatatggagtcaagccataagtt 13108808  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 409
Target Start/End: Original strand, 13111006 - 13111099
Alignment:
Q  314 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 409  Q
    ||||||| |||||||||||||||| ||||| ||  || ||| |||||||||||||||| ||||||| | ||||||||||| |||||||||||||||    
T  13111006 caacaatattttgtgaacaaagtaataaaaact--aaaatattttgatacattaaactgaagcataaaatacaaatatattgagccaagccataag 13111099  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 6723687 - 6723624
Alignment:
Q  348 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagtt 411  Q
    ||||||| |||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||    
T  6723687 taagatattttgatacattaaactaaatcatacactataaatatatagagccaagtcataagtt 6723624  T

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