View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16260_low_6 (Length: 354)

Name: NF16260_low_6
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16260_low_6
NF16260_low_6
[»] chr7 (7 HSPs)
chr7 (108-339)||(5714743-5714975)
chr7 (76-166)||(45613982-45614072)
chr7 (85-150)||(24527482-24527547)
chr7 (76-183)||(21326978-21327084)
chr7 (76-183)||(28517427-28517533)
chr7 (76-141)||(4501161-4501226)
chr7 (86-183)||(45003047-45003143)
[»] chr2 (4 HSPs)
chr2 (102-195)||(30602338-30602430)
chr2 (125-196)||(10587144-10587214)
chr2 (106-193)||(41702123-41702209)
chr2 (113-166)||(20143122-20143175)
[»] chr8 (6 HSPs)
chr8 (76-196)||(38815142-38815261)
chr8 (100-183)||(18804474-18804556)
chr8 (122-195)||(12751032-12751104)
chr8 (84-150)||(39434560-39434626)
chr8 (85-130)||(6618198-6618243)
chr8 (87-184)||(24320197-24320293)
[»] chr1 (6 HSPs)
chr1 (85-184)||(30688417-30688515)
chr1 (85-183)||(5453956-5454053)
chr1 (103-183)||(19035340-19035419)
chr1 (100-183)||(31737486-31737568)
chr1 (103-183)||(22346756-22346835)
chr1 (85-183)||(28493480-28493577)
[»] chr4 (10 HSPs)
chr4 (100-197)||(26521336-26521432)
chr4 (76-181)||(39001260-39001364)
chr4 (100-182)||(12053329-12053410)
chr4 (100-166)||(47585172-47585238)
chr4 (100-166)||(50464460-50464526)
chr4 (100-148)||(50463107-50463155)
chr4 (105-196)||(23604938-23605028)
chr4 (105-183)||(40392723-40392800)
chr4 (85-183)||(53619447-53619544)
chr4 (76-129)||(34107836-34107889)
[»] chr3 (4 HSPs)
chr3 (100-184)||(39583393-39583476)
chr3 (76-183)||(26772619-26772725)
chr3 (76-183)||(53785570-53785676)
chr3 (76-183)||(32546656-32546762)
[»] chr6 (4 HSPs)
chr6 (76-183)||(17249445-17249551)
chr6 (76-178)||(3137387-3137488)
chr6 (76-140)||(959484-959548)
chr6 (100-136)||(34554440-34554476)
[»] scaffold0009 (1 HSPs)
scaffold0009 (76-183)||(102967-103073)
[»] chr5 (1 HSPs)
chr5 (100-166)||(23092696-23092762)
[»] scaffold0470 (1 HSPs)
scaffold0470 (85-130)||(7516-7561)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 108 - 339
Target Start/End: Complemental strand, 5714975 - 5714743
Alignment:
Q  108 gatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatcttcgatatatattaacaaataat 207  Q
    |||| ||||||||||| |||||  ||||||| |||||| | |||||||  ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5714975 gattggttttgtcatctaaaaaaacctagcaacgtagcctattttctgcatgccttctaattcatatgtaagtaatcttcgatgtatattaacaaataat 5714876  T
Q  208 ctagcaaactctcaatccaaagaggcacttaata-acaacacatgtacagataggattaggaaggttcttacacactagttttataactaaactagaatt 306  Q
     || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  5714875 atatcaaactctcaatccaaggaggcacttaatatacaacacatgtacagataggattaggaaggttcttacacaatagttttataaccaaactagaatt 5714776  T
Q  307 aaaaaccaaacataaccccacaaaagaagaaac 339  Q
    |||||||||||||||||||||||||||||||||    
T  5714775 aaaaaccaaacataaccccacaaaagaagaaac 5714743  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 45613982 - 45614072
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttcta 166  Q
    |||||||  |||||| ||||| | |||||||||||| |||||| ||||| |||||| ||||| ||| |||||||| || | ||||||||||    
T  45613982 tctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccgcttgccttcta 45614072  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 24527547 - 24527482
Alignment:
Q  85 tccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgtt 150  Q
    |||||| ||||| |||| ||||||||| ||||||||||||||||||  ||||| ||| ||||||||    
T  24527547 tccatgaatgttgtattcacgaggattggttttgtcatccaaaaagatctagcggcgcagcttgtt 24527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 21326978 - 21327084
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||| | || |||||||||  ||||| |||||||||||| ||| | ||| |||||||| |||| ||||||||| ||||| |||    
T  21326978 tctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaaggtctaacggcgcagcttgttgtctgcttgccttct-attcaagtg 21327076  T
Q  176 taagtaat 183  Q
    ||| ||||    
T  21327077 taaataat 21327084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 28517427 - 28517533
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||| |||||| ||||| | |||||||||||| |||||| |||||||||| | |||||  |  ||||||||  | || ||||| || |||||||||    
T  28517427 tctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaagtctagcgacacagcttgttgcccgtctgcctcct-attcatgtg 28517525  T
Q  176 taagtaat 183  Q
    ||||||||    
T  28517526 taagtaat 28517533  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 4501226 - 4501161
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcg 141  Q
    ||||||| || |||| ||||| | |||||||||||| | ||||||||| ||||||| |||||||||    
T  4501226 tctcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaaaaaggtctagcagcg 4501161  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 45003047 - 45003143
Alignment:
Q  86 ccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    ||||| ||||| | ||||||| ||||  ||||| |||||||||||| ||||| ||| ||||| || || | |||||| || |||||||||||||||||    
T  45003047 ccatgaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgcttgcctcct-attcatgtgtaagtaat 45003143  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 30602430 - 30602338
Alignment:
Q  102 tacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatcttcgatatata 195  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||||||  | |  |||||||| |||||||||||| ||||| | ||||||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttct-attcatgtgtaattaatccttgatatata 30602338  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 10587144 - 10587214
Alignment:
Q  125 aaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatcttcgatatatat 196  Q
    ||||||| ||||| ||||||||||||  | ||||||||||| |||||||||||||||||| | |||||||||    
T  10587144 aaaaaggtctagcggcgtagcttgttgcccgtttgccttct-attcatgtgtaagtaatccttgatatatat 10587214  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 41702209 - 41702123
Alignment:
Q  106 aggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatcttcgatata 193  Q
    |||||| |||||| |||||||||||||||||  ||| ||||||||  |   ||||||||| |||||||||||||||||| | ||||||    
T  41702209 aggattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttct-attcatgtgtaagtaatccttgatata 41702123  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 20143122 - 20143175
Alignment:
Q  113 gttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttcta 166  Q
    |||||| |||||||||||| ||||| ||| | |||||| |||||||||||||||    
T  20143122 gttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttcta 20143175  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 38815261 - 38815142
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||| | |||||||||||| |||||  ||||||||||||| |||| ||| ||||||||  | | ||||||||| |||||||||    
T  38815261 tctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttct-attcatgtg 38815163  T
Q  176 taagtaatcttcgatatatat 196  Q
    |||| |||| | |||||||||    
T  38815162 taagcaatccttgatatatat 38815142  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 18804556 - 18804474
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    |||||||||||| |||||| |||||||||||| ||||| ||| ||||||||  ||| ||||||||| ||||| |||||| ||||    
T  18804556 tttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgccttct-attcaagtgtaaataat 18804474  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 12751032 - 12751104
Alignment:
Q  122 tccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatcttcgatatata 195  Q
    |||||||||||||||||||| |||||||| || |||||| |||| ||| |||||||| ||||| | ||||||||    
T  12751032 tccaaaaaggcctagcagcgcagcttgttgtcagtttgctttct-atttatgtgtaattaatcattgatatata 12751104  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 39434626 - 39434560
Alignment:
Q  84 atccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgtt 150  Q
    ||||||| ||||| | ||||||||||||  ||||| |||||||||||| ||||| ||| ||||||||    
T  39434626 atccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgtt 39434560  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 6618243 - 6618198
Alignment:
Q  85 tccatgcatgttatatttacgaggatttgttttgtcatccaaaaag 130  Q
    |||||| ||||||| |||||||| ||| ||||||||||||||||||    
T  6618243 tccatgaatgttatgtttacgagtattggttttgtcatccaaaaag 6618198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 24320293 - 24320197
Alignment:
Q  87 catgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatc 184  Q
    |||| ||||| | ||||||||||||  |||||  ||||||||||| ||||||| | ||||||||  ||||||| ||||| |||| ||||||| |||||    
T  24320293 catgaatgttgtgtttacgaggattgattttgatatccaaaaaggtctagcagtgcagcttgttgcctgtttgtcttct-attcgtgtgtaattaatc 24320197  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 30688515 - 30688417
Alignment:
Q  85 tccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatc 184  Q
    |||||| ||||| | |||||||||||| ||||||| ||||||||||||||||| ||| ||||||||  | | ||||| ||| |||||||||||| |||||    
T  30688515 tccatgaatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatct-attcatgtgtaattaatc 30688417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 5454053 - 5453956
Alignment:
Q  85 tccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    |||||| ||||| | ||||| |||||| ||||||||||||||||||| ||||| ||| ||||||||  | | |||||| || |||||||||||||||||    
T  5454053 tccatgaatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcct-attcatgtgtaagtaat 5453956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 19035419 - 19035340
Alignment:
Q  103 acgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    ||||||||| ||||||||||||||||||| ||||| ||| |||||||| || | ||||||||| ||||| |||||| ||||    
T  19035419 acgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttct-attcaagtgtaaataat 19035340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 31737486 - 31737568
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    ||||||||||||  ||||| ||||||||||||| | || ||| |||||||| |||||||||||||| ||||| |||||| ||||    
T  31737486 tttacgaggattgattttgccatccaaaaaggcttggcggcgcagcttgttgtctgtttgccttct-attcaagtgtaaataat 31737568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 22346835 - 22346756
Alignment:
Q  103 acgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    ||||||||| |||||| |||||||||||| ||||| ||| |||||||| || | ||||||||| ||||| |||||| ||||    
T  22346835 acgaggattagttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttct-attcaagtgtaaataat 22346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 28493480 - 28493577
Alignment:
Q  85 tccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    |||||| ||||||| || |||||||||  ||||| |||||||||||| ||||| ||| || ||||| || ||||| ||||| ||||| |||||| ||||    
T  28493480 tccatgaatgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttct-attcaagtgtaaataat 28493577  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 26521432 - 26521336
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatcttcgatatatatt 197  Q
    |||||||||||| |||||||||||||||||||  |||| ||  ||||| || || | ||||||||| || ||||||||||||||| | ||||||||||    
T  26521432 tttacgaggattggttttgtcatccaaaaaggtttagcggcacagctttttgtccgcttgccttct-atccatgtgtaagtaatccttgatatatatt 26521336  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 39001364 - 39001260
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||| | |||||||||||| ||||||||||||||||||| ||||| ||| || |||||  | | |||||| || |||||||||    
T  39001364 tctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaaggtctagcggcgcagtttgttgcccgcttgcctcct-attcatgtg 39001266  T
Q  176 taagta 181  Q
    ||||||    
T  39001265 taagta 39001260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 12053410 - 12053329
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaa 182  Q
    |||||||| ||| |||||| |||| ||||||||| |||  || |||||||| |||| |||||||||| |||||||||||||||    
T  12053410 tttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttcta-ttcatgtgtaagtaa 12053329  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 47585172 - 47585238
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttcta 166  Q
    ||||||| |||| ||||||||||| |||||||  |||| |||||| ||||| |||||||||||||||    
T  47585172 tttacgaagattggttttgtcatctaaaaaggtttagcggcgtagtttgttgtctgtttgccttcta 47585238  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 50464460 - 50464526
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttcta 166  Q
    ||||||||||||| ||||| ||||||||||| |||||| ||| |||||||| || | ||||||||||    
T  50464460 tttacgaggatttattttgccatccaaaaagacctagcggcgcagcttgttgtccgcttgccttcta 50464526  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 50463107 - 50463155
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttg 148  Q
    ||||||||||||||||||| ||||||||||| |||||| ||| ||||||    
T  50463107 tttacgaggatttgttttgccatccaaaaagacctagcggcgcagcttg 50463155  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 23605028 - 23604938
Alignment:
Q  105 gaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatcttcgatatatat 196  Q
    |||||||  |||||||||||||||||| ||||| ||| | |||||| || | ||| ||||| |||||||||||| ||||| | |||||||||    
T  23605028 gaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttct-attcatgtgtaaataatcattgatatatat 23604938  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 40392723 - 40392800
Alignment:
Q  105 gaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    ||||||| |||||| |||||||||||| ||||| ||| |||||||| || | ||||||||| ||||| |||||| ||||    
T  40392723 gaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttct-attcaagtgtaaataat 40392800  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 53619544 - 53619447
Alignment:
Q  85 tccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaat 183  Q
    |||||| ||||| | |||||||| ||| |||||| |||||||||||| ||||| ||| ||||||||  ||  || ||| || |||||||||||||||||    
T  53619544 tccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctacttacctcct-attcatgtgtaagtaat 53619447  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 34107836 - 34107889
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaa 129  Q
    ||||||| ||||||| ||||| | || ||||||||| |||||||||||||||||    
T  34107836 tctcctagatccatgaatgttgtgttcacgaggattggttttgtcatccaaaaa 34107889  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 39583393 - 39583476
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtgtaagtaatc 184  Q
    ||||||||||||  ||||| |||||||||||| ||||| ||| | |||||| |||| |||| |||| ||||||||||||||||||    
T  39583393 tttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgctttct-attcatgtgtaagtaatc 39583476  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 26772725 - 26772619
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||| | ||||||||||||  ||||| |||||||||||| ||||| ||| ||||||||  | | |||||| || |||||||||    
T  26772725 tctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcct-attcatgtg 26772627  T
Q  176 taagtaat 183  Q
    ||||||||    
T  26772626 taagtaat 26772619  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 53785676 - 53785570
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||||| |||||||||||| |||||| ||||||| |||| | ||| ||||||||||||  | | ||||||||| ||||| |||    
T  53785676 tctcctaggtccatgaatgttatgtttacgaggattggttttgccatccaacaaggtccagcggcgtagcttgttgcccgcttgccttct-attcaagtg 53785578  T
Q  176 taagtaat 183  Q
    ||| ||||    
T  53785577 taaataat 53785570  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 32546762 - 32546656
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||| | || ||||||||| |||||| |||||||||||| ||||| ||| ||||||||  | | ||||||||| ||||| |||    
T  32546762 tctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttct-attcaagtg 32546664  T
Q  176 taagtaat 183  Q
    ||| ||||    
T  32546663 taaataat 32546656  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 17249445 - 17249551
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||| | |||| ||||| | |||||||||||| |||||| |||||||||||| ||||| ||| ||||||||  | | |||||| || ||||||||     
T  17249445 tctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcct-attcatgta 17249543  T
Q  176 taagtaat 183  Q
    ||||||||    
T  17249544 taagtaat 17249551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 3137387 - 3137488
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||| | |||||||||||| |||||| ||||||||||||| |||||| | | ||||||  | ||||||||||  |||||||||    
T  3137387 tctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtttgccttc-cattcatgtg 3137485  T
Q  176 taa 178  Q
    |||    
T  3137486 taa 3137488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 959548 - 959484
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagc 140  Q
    |||||||  |||||| ||||| | ||||||||||||  |||||||||| ||||||||||| ||||    
T  959548 tctcctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaaggcctaacagc 959484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 34554440 - 34554476
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctag 136  Q
    ||||||||||||  |||||||||||||||||||||||    
T  34554440 tttacgaggattgattttgtcatccaaaaaggcctag 34554476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 103073 - 102967
Alignment:
Q  76 tctcctaaatccatgcatgttatatttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttctaattcatgtg 175  Q
    |||||||  |||||| ||||| | |||||||||||| |||||| |||||||||||| ||||| ||| | ||||||  | | ||||||||| ||||| |||    
T  103073 tctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttct-attcaagtg 102975  T
Q  176 taagtaat 183  Q
    ||| ||||    
T  102974 taaataat 102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 23092762 - 23092696
Alignment:
Q  100 tttacgaggatttgttttgtcatccaaaaaggcctagcagcgtagcttgttttctgtttgccttcta 166  Q
    ||||||||||||  ||||||||||||| |||| |||||| || || ||||| |||| ||||||||||    
T  23092762 tttacgaggattgattttgtcatccaacaaggtctagcaacgcagtttgttgtctgcttgccttcta 23092696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 7561 - 7516
Alignment:
Q  85 tccatgcatgttatatttacgaggatttgttttgtcatccaaaaag 130  Q
    |||||| ||||||| |||||||| ||| ||||||||||||||||||    
T  7561 tccatgaatgttatgtttacgagtattggttttgtcatccaaaaag 7516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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