View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16260_low_7 (Length: 347)
Name: NF16260_low_7
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16260_low_7 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 33814882 - 33814557
Alignment:
| Q |
11 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttg |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33814882 |
catcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacttggggtttgggttg |
33814783 |
T |
|
| Q |
111 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814782 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
33814683 |
T |
|
| Q |
211 |
tcatctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacata |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814682 |
tcatctcttcttccatggattgtaaccatttttccttattggttgtctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacata |
33814583 |
T |
|
| Q |
311 |
ttcacctgagaaatatcttcttgatg |
336 |
Q |
| |
|
|||||||||||| |||||| |||||| |
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| T |
33814582 |
ttcacctgagaagtatctttttgatg |
33814557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 33809964 - 33809826
Alignment:
| Q |
11 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatgg-caccccttcacaacaattcgtgctttgtacctggggtttgggtt |
109 |
Q |
| |
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|||| |||||||||| || || |||| ||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||| ||||| ||||||| |
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| T |
33809964 |
catcttcaccaccggggaaaacattttttcaaaatcaatgcctttcttttgaagggcaccccttcacaccaattcatgctttgtacttgggggttgggtt |
33809865 |
T |
|
| Q |
110 |
gttctcttcagacttg-agtttgaacacccatttattttt |
148 |
Q |
| |
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| || ||| | | ||| |||||||| |||||||||||||| |
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| T |
33809864 |
g-tccctttaaaattgaagtttgaaaacccatttattttt |
33809826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 982 - 657
Alignment:
| Q |
11 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||| |
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|
| T |
982 |
catcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttg |
883 |
T |
|
| Q |
111 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
882 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtttcattctcctttagggatt |
783 |
T |
|
| Q |
211 |
tcatctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||| |||||||| |
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| T |
782 |
gcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctttgtgaagtttacata |
683 |
T |
|
| Q |
311 |
ttcacctgagaaatatcttcttgatg |
336 |
Q |
| |
|
|||||||||||| ||||||||||||| |
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|
| T |
682 |
ttcacctgagaagtatcttcttgatg |
657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 9754277 - 9754594
Alignment:
| Q |
19 |
ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
9754277 |
ccaccgatgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctcttc |
9754376 |
T |
|
| Q |
119 |
agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9754377 |
agacttaagtttgaacacccatttatttttcaatgccctctttccatttggcaattttaccaggtcatacgtctcattctcctttagggattgcatctct |
9754476 |
T |
|
| Q |
219 |
tcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctg |
318 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
9754477 |
tcttccatggattacaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcacctg |
9754576 |
T |
|
| Q |
319 |
agaaatatcttcttgatg |
336 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
9754577 |
agaagtatcttcttgatg |
9754594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 54969165 - 54969490
Alignment:
| Q |
11 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||| ||||| ||||| ||||||||| |
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|
| T |
54969165 |
catcttcaccaccggtgagaatatttcttcaaaatcaacgtctttcttttgatggcaccccttcacgactattcgtgccttgtatctgggatttgggttg |
54969264 |
T |
|
| Q |
111 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
54969265 |
ttctcttcagacttgagtttaaacacccatttatttttcaatgccctctttccatctggtaatttgaccaggtcatacgtgtcattctcctttagggatt |
54969364 |
T |
|
| Q |
211 |
tcatctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |
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|
| T |
54969365 |
gcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacata |
54969464 |
T |
|
| Q |
311 |
ttcacctgagaaatatcttcttgatg |
336 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
54969465 |
ttcacctgagaagtatcttcttgatg |
54969490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 4283981 - 4284273
Alignment:
| Q |
11 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttg |
110 |
Q |
| |
|
|||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||| |||| |
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|
| T |
4283981 |
catcttcatcactggtgagaatttttcttcaaaatcaatgcctttcttttgatggcattccttcacgac---tcgtgctttgtacctagggtttgagttg |
4284077 |
T |
|
| Q |
111 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
210 |
Q |
| |
|
|||| ||||||| |||| |||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||| || | ||||||||||||||| |
|
|
| T |
4284078 |
ttctattcagacatgagcttgaacacccgtttatttttcaatgccctatttccattcagtaattttaccaagtcatatgtttggttctcctttagggatg |
4284177 |
T |
|
| Q |
211 |
tcatctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaattta |
306 |
Q |
| |
|
||| ||||||| ||| |||||| |||||||| |||||||||| ||||||| |||||||||| |||||||||||||| ||| | ||| ||||||| |
|
|
| T |
4284178 |
gcatttcttcttgaatgcattgcagccatttttgcttattggttgtctctatggcttccatgatgctttgaggttccctttcattagtaaaattta |
4284273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 13563709 - 13563767
Alignment:
| Q |
278 |
ttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatg |
336 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
13563709 |
ttgaggttcgccttccttagtgaagtttacatattcacctgagaagtatcttcttgatg |
13563767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 4837499 - 4837704
Alignment:
| Q |
11 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttg |
110 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||||| |||| ||||||||| |
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|
| T |
4837499 |
catcctcaccactggtgagaatatttcttcaaaatcaatgcctttctttcgatggcaccccttcacgactatttgtgctttgtatatgggatttgggttg |
4837598 |
T |
|
| Q |
111 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4837599 |
ttctcttcagacttgagtttgaacacccacttgtttttcaacgccctctttccatctggtaattttaccagatcatacgtctcattctcctttagggatt |
4837698 |
T |
|
| Q |
211 |
tcatct |
216 |
Q |
| |
|
||||| |
|
|
| T |
4837699 |
gcatct |
4837704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 4837703 - 4837794
Alignment:
| Q |
245 |
cttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatg |
336 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||| |
|
|
| T |
4837703 |
cttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcaactgagaagtatctttttgatg |
4837794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 1130083 - 1130219
Alignment:
| Q |
17 |
caccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctct |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |||||||||| |||||| | ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
1130083 |
caccaccgatgagaatatttcttcaaaatcattgcctttattttgatggcgccccttagcgacaattcgtgctttgtacccggggttcaacttgttctct |
1130182 |
T |
|
| Q |
117 |
tcagacttgagtttgaacacccatttatttttcaatg |
153 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1130183 |
tcagacttgagtttgaacatccaattatttttcaatg |
1130219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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