View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16260_low_8 (Length: 333)
Name: NF16260_low_8
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16260_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 44869972 - 44870147
Alignment:
| Q |
25 |
taaattttgatcctgctcttttgtcgatgccgggtcccagtcttcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44869972 |
taaattttgatcctgctcttttgtcgatgccgggtcccagtcttcccaatttttatctacaaactcagtgccctcaaaacaattctggattctcatttcc |
44870071 |
T |
|
| Q |
125 |
taacctgataggtacggaacattgtaatgtctatgtatgataacggatatgaaattgaatcaacaggtgtttctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44870072 |
taacctgataggtacggaacattgtaatgtctatgtatgataacggatatgaaattgaatcaacaggtgtttctgt |
44870147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 44870182 - 44870299
Alignment:
| Q |
198 |
tgtgccattctttatgtttccatgagccgtgtagacacaggacttgatgtgtttatatggaagtatgtccttatggctgcaaaatgcttgacaatttctg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44870182 |
tgtgccattctttatgtttccatgagccgtgtagacacaggactggatgtgtttatatggaagtatgtccttatggctgcaaaatgcttgacaatttctg |
44870281 |
T |
|
| Q |
298 |
ctatctgtgagaaggggg |
315 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
44870282 |
ctatctgtgaggaggggg |
44870299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 44859247 - 44859335
Alignment:
| Q |
205 |
ttctttatgtttccatgagccgtgtagacacaggacttgatgtgtttatatggaagtatgtccttatggctgcaaaatgcttgacaatt |
293 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
44859247 |
ttctgtatgttagcatgagccgtgtagacacaggactagatgtgtttatatggaaatatgtccttatggctgcacaatgcttgacaatt |
44859335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 44859086 - 44859147
Alignment:
| Q |
64 |
gtcttcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcct |
125 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
44859086 |
gtcttcccattttttatctacaatctcagtgccctaagaacaactctggattctcatttcct |
44859147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 44833739 - 44833795
Alignment:
| Q |
68 |
tcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
124 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44833739 |
tcccatttttaatctacaaactcagtgccctcaaaacaactctggattcttatttcc |
44833795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 44846439 - 44846495
Alignment:
| Q |
68 |
tcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
44846439 |
tcccattttttatctacaaactcagtgccctcggtacaactttggatactcatttcc |
44846495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University