View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16260_low_9 (Length: 301)

Name: NF16260_low_9
Description: NF16260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16260_low_9
NF16260_low_9
[»] chr6 (8 HSPs)
chr6 (16-164)||(14820396-14820544)
chr6 (33-164)||(14818118-14818249)
chr6 (192-279)||(14820265-14820352)
chr6 (21-130)||(6394601-6394710)
chr6 (49-145)||(6426254-6426350)
chr6 (17-100)||(6589572-6589655)
chr6 (64-160)||(7442620-7442716)
chr6 (19-74)||(6423010-6423065)
[»] chr7 (4 HSPs)
chr7 (21-164)||(15092404-15092547)
chr7 (50-134)||(10170307-10170391)
chr7 (50-134)||(10177832-10177916)
chr7 (80-164)||(15106764-15106848)
[»] chr1 (2 HSPs)
chr1 (71-164)||(49219026-49219118)
chr1 (62-117)||(33160478-33160533)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 14820544 - 14820396
Alignment:
Q  16 tcatctttgctagtgctatgagattgctatgctgaagtttgaacactgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaa 115  Q
    ||||||||||||||  ||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  14820544 tcatctttgctagtattatgaaattgcgttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctctgagaatttgcctttttaaaa 14820445  T
Q  116 tgacagcttacaaatgtgcgttataattccctaagtaatagtgtaacat 164  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  14820444 tgacatattacaaatgtgcgttataattccctaagtaatagtgtaacat 14820396  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 14818249 - 14818118
Alignment:
Q  33 atgagattgctatgctgaagtttgaacactgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatgacagcttacaaatgt 132  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  14818249 atgaaattgctttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctttgagaatttgcctttttaaaatgacatcttacaaatgt 14818150  T
Q  133 gcgttataattccctaagtaatagtgtaacat 164  Q
     |||||||||||||||||||||||||||||||    
T  14818149 ccgttataattccctaagtaatagtgtaacat 14818118  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 14820352 - 14820265
Alignment:
Q  192 ttgtttaatgtctatgccatggaagaatgacggatttctaccaaccattgtggtcaatttgtaacggaatgttgatgcctaatatggc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  14820352 ttgtttaatgtctatgccatggaagaatgacggatttctaccaaccattgtagtcaatttgtaaaggaatgctgatgcctaatatggc 14820265  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 6394710 - 6394601
Alignment:
Q  21 tttgctagtgctatgagattgctatgctgaagtttgaacactgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatgaca 120  Q
    |||||||||  | ||| |||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||| || ||||||||||||| ||    
T  6394710 tttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctgagaaatttcctttttaaaatgtca 6394611  T
Q  121 gcttacaaat 130  Q
     |||||||||    
T  6394610 tcttacaaat 6394601  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 6426350 - 6426254
Alignment:
Q  49 gaagtttgaacactgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatgacagcttacaaatgtgcgttataattcc 145  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||||||| | |||||||||||||| ||  |||||||||||||| ||||||||    
T  6426350 gaagtttgaacattgtaagttgtttttgttttatgatttacttctctgagaaatagcctttttaaaatgtcatattacaaatgtgcgtaataattcc 6426254  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 6589572 - 6589655
Alignment:
Q  17 catctttgctagtgctatgagattgctatgctgaagtttgaacactgtaagttgtttttattttaagatttacttctctgagaa 100  Q
    ||||||| |||||  | ||| |||||| |||| |||| ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  6589572 catctttactagtattctgaaattgctgtgctaaagtatgaacactgtaagttgtttttgttttaatattcacttctctgagaa 6589655  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 7442620 - 7442716
Alignment:
Q  64 taagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatgacagcttacaaatgtgcgttataattccctaagtaatagtgta 160  Q
    |||||||||||| |||||||||||| |||| |||||| ||   ||||| ||||| || |||| ||| |||| | |||||| ||||||||||||||||    
T  7442620 taagttgtttttgttttaagatttatttctttgagaaattagtttttttaaatgtcaacttataaacgtgcatgataatttcctaagtaatagtgta 7442716  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 6423065 - 6423010
Alignment:
Q  19 tctttgctagtgctatgagattgctatgctgaagtttgaacactgtaagttgtttt 74  Q
    |||||||||||  | ||| ||| ||||||| |||||||||||||||||||||||||    
T  6423065 tctttgctagtattctgaaatttctatgctaaagtttgaacactgtaagttgtttt 6423010  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 15092404 - 15092547
Alignment:
Q  21 tttgctagtgctatgagattgctatgctgaagtttgaacactgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatgaca 120  Q
    |||||||||  | ||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| || ||||||||||||| ||    
T  15092404 tttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaagatttacttctctgagaaatttcctttttaaaatgtca 15092503  T
Q  121 gcttacaaatgtgcgttataattccctaagtaatagtgtaacat 164  Q
     ||| ||||| ||  |||||||| ||||||| || |||||||||    
T  15092504 tctttcaaatttgaattataattgcctaagttattgtgtaacat 15092547  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 10170307 - 10170391
Alignment:
Q  50 aagtttgaacactgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatgacagcttacaaatgtgc 134  Q
    |||||||||| |||||||| |||||| |||||||||||| |||| |||||| ||    |||||||||| || ||||| |||||||    
T  10170307 aagtttgaactctgtaagtggtttttgttttaagatttagttctttgagaaattaatattttaaaatgtcaacttacgaatgtgc 10170391  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 10177832 - 10177916
Alignment:
Q  50 aagtttgaacactgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatgacagcttacaaatgtgc 134  Q
    |||||||||| |||||||| |||||| |||||||||||| |||| |||||| ||    |||||||||| || ||||| |||||||    
T  10177832 aagtttgaactctgtaagtggtttttgttttaagatttagttctttgagaaattaatattttaaaatgtcaacttacgaatgtgc 10177916  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 15106764 - 15106848
Alignment:
Q  80 taagatttacttctctgagaatttgcctttttaaaatgacagcttacaaatgtgcgttataattccctaagtaatagtgtaacat 164  Q
    |||| |||||||||||||||| || ||||| ||||||  || ||||||||||||| |||||  ||||  | ||||||||||||||    
T  15106764 taagttttacttctctgagaaatttcctttataaaatttcatcttacaaatgtgcattatatgtcccctactaatagtgtaacat 15106848  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 49219118 - 49219026
Alignment:
Q  71 tttttattttaagatttacttctctgagaatttgcctttttaaaatgacagcttacaaatgtgcgttataattccctaagtaatagtgtaacat 164  Q
    ||||| ||| ||||||||||||||| |||| || ||||||||||||| || ||| ||||| ||  |||||||| |||||||| |||||||||||    
T  49219118 tttttgtttcaagatttacttctctaagaaatttcctttttaaaatg-catcttgcaaatttgaattataattgcctaagtattagtgtaacat 49219026  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 33160533 - 33160478
Alignment:
Q  62 tgtaagttgtttttattttaagatttacttctctgagaatttgcctttttaaaatg 117  Q
    ||||||||||||||  ||||||||||||||||||||||| || | |||||||||||    
T  33160533 tgtaagttgtttttgctttaagatttacttctctgagaaattacttttttaaaatg 33160478  T

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