View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16261_high_1 (Length: 382)
Name: NF16261_high_1
Description: NF16261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16261_high_1 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 18304 - 18577
Alignment:
| Q |
1 |
cggctgagttggacgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaatgatgaagaagc |
100 |
Q |
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| T |
18304 |
cggctgagttggacgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagaggaagaagagacagaggagaatgatgaagaagc |
18403 |
T |
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| Q |
101 |
cataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccgatg |
200 |
Q |
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| T |
18404 |
cataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccgatg |
18503 |
T |
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| Q |
201 |
aaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaaga |
274 |
Q |
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| T |
18504 |
aaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgtgaaaga |
18577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 8726 - 8640
Alignment:
| Q |
218 |
tgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaagatgttgtgactttcatggtcatggatgattt |
304 |
Q |
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| T |
8726 |
tgttggaaaaaaggttgttgaagataacgtttctattaagaatggttttgtgaaagatgttgtgacatttatggtaatggacgattt |
8640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 17016769 - 17016441
Alignment:
| Q |
1 |
cggctgagttgg---acgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaatgatgaaga |
97 |
Q |
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| T |
17016769 |
cggctgagttggacgacgatgaggatcaagaggaagatgaagaat------------atgacgatgaagaggaagaagagacagaggaggatgatgaaga |
17016682 |
T |
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| Q |
98 |
agccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccg |
197 |
Q |
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| T |
17016681 |
aaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccg |
17016582 |
T |
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| Q |
198 |
atgaaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaagatgttgtgactttcatggtcatgg |
297 |
Q |
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| T |
17016581 |
atgaaccgagaaaccagttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgtgaaagatgttgtgactttcatggtcatgg |
17016482 |
T |
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| Q |
298 |
atgatttgtcaattcagcccatgccgaccttatcaggcatt |
338 |
Q |
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| T |
17016481 |
atgatttgtcaattcagcccatgccgaccttatcaggcatt |
17016441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 17547206 - 17546878
Alignment:
| Q |
1 |
cggctgagttgg---acgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaatgatgaaga |
97 |
Q |
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| T |
17547206 |
cggctgagttggacgacgatgaggatcaagaggaagatgaagaat------------atgacgatgaagaggaagaagagacagaggaggatgatgaaga |
17547119 |
T |
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| Q |
98 |
agccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccg |
197 |
Q |
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| T |
17547118 |
aaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccg |
17547019 |
T |
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| Q |
198 |
atgaaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaagatgttgtgactttcatggtcatgg |
297 |
Q |
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| T |
17547018 |
atgaaccgagaaaccagttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgtgaaagatgttgtgactttcatggtcatgg |
17546919 |
T |
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| Q |
298 |
atgatttgtcaattcagcccatgccgaccttatcaggcatt |
338 |
Q |
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| T |
17546918 |
atgatttgtcaattcagcccatgccgaccttatcaggcatt |
17546878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 52133476 - 52133430
Alignment:
| Q |
258 |
aatggttttgcgaaagatgttgtgactttcatggtcatggatgattt |
304 |
Q |
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| T |
52133476 |
aatggttttgtgaaagatgttgtgacatttatggtgatggatgattt |
52133430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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